Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1730 ATGGCTTTTACCTCCATCCCAGCTTATCTTGATCCAGCCAACTGGCAACAACAGCAACCTAATCATCAGACCGGAAGTAGCGGCACGAGTTCTCAGCTTCTTCCGCCGCCGCCACCATCACTGCCGCCCCCACAATCTCATGGACCTGGTGGCACCAGCTCGATCAGGCCAGGTTCGATGGCGGATCGAGCCCGGATGGCCAACATACCTGTGCCGGAGACTGCACTAAAATGCCCAAGATGTGAATCCACAAACACAAAATTTTGCTACTTCAACAACTACAGCCTCTCTCAGCCACGCCACTTCTGCAAGACCTGTAGAAGGTACTGGACAAGAGGCGGCGCCTTGAGGAATGTCCCGGTCGGAGGGGGCTGCCGGAGGAACAAGAGAAGCAAAGGAAGCAGCTCGAAGTCGCCAGTGAGCTCCGATCGCCAAACGGGTAGTGCTAGTTCGACAAATTCAGTTTCTTCTAACAGTGGTTCTGGTGATATAGTAGGCCTTTCGCCTCAGGTTCCACCACTGAGGTTCATGGCTCCATTACATCATCAACTAAATGACTTTGCAGCCGCAGAGATGGGCATGGGCTTAAACTATGGCCTGAGTTATGGCTCAATTTCGGCTCCAATGGGGGGAGTAGGAGACTTAAATTTCCAGATAGGAAGTGCTTTAGGCGGAGCAAGTGGTGGCAACGGTGCCGGCGGTGGAGCTGGAGGGTCTATTTTATCTGCAGCTGGTTTGGAGCAATGGCGTATACCACAAACACAGCAATTTCCTTTCTTGGCTGGTTTGGAAGCTTCACCTGGATTGTACTCATTTGAAGGTGGTGCCGAGGCATCGGGATACGGTGGTGGCAGTGTACCGAGTCAGGTCCGGCCGAAGGTGTCTACTTCTGGGGTGATAACTCAGCTTGCTTCAGTGAAAATGGAAGATAGTCATCCGGAACTGAATTTGTCAAGGCAGTTCTTGGGAATCAATAATCCAACTAATCCTGAGCAATATTGGGGTACCGGTACGACTACTTCAGCTTGGACAGATCTTTCTGGGTTCAGCTCTTCTTCCAATACTAGCAATCAACTATAG 1080 0.513 MAFTSIPAYLDPANWQQQQPNHQTGSSGTSSQLLPPPPPSLPPPQSHGPGGTSSIRPGSMADRARMANIPVPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSKGSSSKSPVSSDRQTGSASSTNSVSSNSGSGDIVGLSPQVPPLRFMAPLHHQLNDFAAAEMGMGLNYGLSYGSISAPMGGVGDLNFQIGSALGGASGGNGAGGGAGGSILSAAGLEQWRIPQTQQFPFLAGLEASPGLYSFEGGAEASGYGGGSVPSQVRPKVSTSGVITQLASVKMEDSHPELNLSRQFLGINNPTNPEQYWGTGTTTSAWTDLSGFSSSSNTSNQL 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1730 359 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 46 169 IPR045174 GO:0003700|GO:0006355
Glsi06g1730 359 MobiDBLite consensus disorder prediction 134 164 - -
Glsi06g1730 359 MobiDBLite consensus disorder prediction 1 58 - -
Glsi06g1730 359 ProSiteProfiles Zinc finger Dof-type profile. 76 130 IPR003851 GO:0003677|GO:0006355
Glsi06g1730 359 ProSitePatterns Zinc finger Dof-type signature. 78 114 IPR003851 GO:0003677|GO:0006355
Glsi06g1730 359 MobiDBLite consensus disorder prediction 120 164 - -
Glsi06g1730 359 MobiDBLite consensus disorder prediction 10 31 - -
Glsi06g1730 359 MobiDBLite consensus disorder prediction 32 46 - -
Glsi06g1730 359 Pfam Dof domain, zinc finger 75 130 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1730 Glsi-ChrGlsi06 64104608 64105883 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1730 1 352 C2C2-Dof Transcription Factor Family AT2G37590 38.281 7.46e-63 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Glsi06g1730 zf-Dof 2.7e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi06g1730 06 64104608 64105883 Glsi06g1730 06 64104608 64105883 ECH
Glsi06g1730 06 64104608 64105883 Glsi07g1768 07 59067228 59068493 PCT