Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g2230 ATGGACACGGCTCAGTGGCCACAGGAGATTGTGGTGAAACCGATAGAAGAGATAGTGACCAAGGGTGGAGGTGTAGAGAGGAAGCCAAGGCCTCAGAAAGAACGAGCCCTAAACTGTCCAAGGTGCCATTCAACCAACACCAAGTTCTGTTACTACAACAACTACAGCCTTACACAGCCTAGATATTTCTGCAAGACTTGTAGAAGGTATTGGACAGAGGGTGGATCCCTGAGAAACATCCCTGTAGGAGGCGGTTCAAGGAAGAACAAGAGATCTTCTTCTTCTTCTTCCTCCAAAAGCCTTCCTCCAACCTTGTCACAGATTTCCACTCAAAACCCTAACATTCTCCAAGCCCGAGATCTCAAATTGACTTTTCCAGCCACCCCAGAATTGTTTCAAGTCAGCAGAAATGTAAACGATAATAGCAACAACATCTCTGCTTCTCCTTCTGCTTTGGAGCTTCTTAATGGGATCAATTCATCAAGGGGTGTGAATTCCTTCACGCCCATCCCCGCTGTTCAGGATCCCAATACAGTTTACACCTCTGGATTTCCGCTGCCAACCCTCAGTTTTAGTTTAGATGGGCTAGGAACCGCCTACCCAGCTCTACAGAACGTTCGAGACACATTTCAAGATTTGAAACAAGTCTCCAGCACATCTGCTATTCAGCAAAACAAGGAGCAAGGCAATTCAACTGGGTATTGGACTGGAATGTTGGGTGGAGGATCTTGCCGAGTAAAGAGGGCACCCAGTGTTGTGTCATTAATTGGTTGGCTTCTAATTTCTGAGGAGAATTGTTTTGTTTCTTTGAGTGGTGTTTAG 822 0.4599 MDTAQWPQEIVVKPIEEIVTKGGGVERKPRPQKERALNCPRCHSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSSSSSSSKSLPPTLSQISTQNPNILQARDLKLTFPATPELFQVSRNVNDNSNNISASPSALELLNGINSSRGVNSFTPIPAVQDPNTVYTSGFPLPTLSFSLDGLGTAYPALQNVRDTFQDLKQVSSTSAIQQNKEQGNSTGYWTGMLGGGSCRVKRAPSVVSLIGWLLISEENCFVSLSGV 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g2230 273 Pfam Dof domain, zinc finger 36 91 IPR003851 GO:0003677|GO:0006355
Glsi05g2230 273 ProSitePatterns Zinc finger Dof-type signature. 39 75 IPR003851 GO:0003677|GO:0006355
Glsi05g2230 273 ProSiteProfiles Zinc finger Dof-type profile. 37 91 IPR003851 GO:0003677|GO:0006355
Glsi05g2230 273 MobiDBLite consensus disorder prediction 78 111 - -
Glsi05g2230 273 MobiDBLite consensus disorder prediction 86 111 - -
Glsi05g2230 273 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 27 192 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g2230 Glsi-ChrGlsi05 68486067 68487322 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g2230 1 243 C2C2-Dof Transcription Factor Family AT4G24060 39.826 2.08e-52 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Glsi05g2230 zf-Dof 6.8e-33 No_clan