Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0671 ATGTCGAAGGTTAAGGGCCCGGCGATAAAGCTATTTGGGAGGACGATTCCGTTGCCACTCAACCGCCCAGTCTCCGCCAATGAGTCTTCTGGATCACCTGCTTCCCCTGAGGATTGCTCTCACCACCATACTCGTATCTCATCTTCGTCTGAAGATAGCTCTGGAAGGGATAAGGAATCATCAAGGAAAGAACTCACCTCAGACCTAGATGATGGTGGTGCTTCACATCAAACCACAGAGGATTTAAAATCTCCCACATCTTCAGTAATTTTTGAGAACCCTAGGGTCCCTTCTCCCTCAGCTGATAGAGAGACTTCTTTACTGAAATCCTCTAGAAATGGAGAACAAAGTGAGACAAGTACACCACAAGATAAAGCTCCCAAGAAACCTGACAAGATACTTCCATGCCCTCGATGCAGTAGCATGGACACCAAATTTTGTTATTATAACAATTACAATGTCAGTCAACCCCGTCATTTCTGTAAGAACTGTCAGAGATACTGGACTGCTGGAGGAAACATTAGAAATGTTCCTGTAGGTGCTGGTCGCCGCAAGAACAAAAATCCTTGTGCCACACACTATCGTCACCTAATGGTTCCCGAGGCCCTTCTAACTGCTAAAGCCAATGCTGCCAATGGATTACATAATGCTGTTTTGGGAAATGGAACAACTGTTTTGACCTTTGGCGCAGATTCTTCTACTAGTGATTCCATGGCTTCTGAATTGAACCTTGCAGAGAAAACACAAAATGGTGTTCTAAATTCGTTTCTTGTACCTGAGCAGAATATTATTGTTTCTTATGTTAGAGAAGATAATGGAGATGATAACTCAATTGGAGCTTCTGTAACAACTTCAACTTCATCAGAAAAGAGGGCCAACGCTGCTTCGCAAGAATCAATGGATAAAAGTTATGAAGGTTTCCCTCCTCAATTGCCATGCTTCCCAGCTTCCCCGTGGAGTTATCCATGGAATTCAGTACAGTGGAGTTCTCCCGTGCCGCCTCCTGCATTGGGTCCGCCAGGCTATCCGGTGTCATTCTATCCCACGCCTACATATTGGGGTTGTACCCTACCAGCCTCCTGGAATATACCATATATTTCTCCACAATCTTCTATGAACCATTCTGCCCCTAGCTTTGGCCCTAATTCACCTACCTTAGGGAAACACTCAAGGGATGGGAACATCCTCACACCAGCAGCCAACTCTCAGAGAGAAAAGCCTGATATAGAGAGTAAGAATTCAGAAAATACTGTCTTGATCCCGAAGACACTGAGAATTGATGATCCCGGTGAAGCTGCAAAGAGTTCTATATGGTCAACACTAGGGATCAGGAATGAAAAGGCCAATTCTCTCAATGGTGGAGGGCTTTTCAAGGCATTCCCATCTAAGGGAGATGACAAGAATCATGTGGTTGAGGCATTACCAATGTTGCAAGCCAACCCAGCAGCTTTGTCGCGGTCTCGTACCTTCCATGAGCGGGCCTAA 1485 0.4532 MSKVKGPAIKLFGRTIPLPLNRPVSANESSGSPASPEDCSHHHTRISSSSEDSSGRDKESSRKELTSDLDDGGASHQTTEDLKSPTSSVIFENPRVPSPSADRETSLLKSSRNGEQSETSTPQDKAPKKPDKILPCPRCSSMDTKFCYYNNYNVSQPRHFCKNCQRYWTAGGNIRNVPVGAGRRKNKNPCATHYRHLMVPEALLTAKANAANGLHNAVLGNGTTVLTFGADSSTSDSMASELNLAEKTQNGVLNSFLVPEQNIIVSYVREDNGDDNSIGASVTTSTSSEKRANAASQESMDKSYEGFPPQLPCFPASPWSYPWNSVQWSSPVPPPALGPPGYPVSFYPTPTYWGCTLPASWNIPYISPQSSMNHSAPSFGPNSPTLGKHSRDGNILTPAANSQREKPDIESKNSENTVLIPKTLRIDDPGEAAKSSIWSTLGIRNEKANSLNGGGLFKAFPSKGDDKNHVVEALPMLQANPAALSRSRTFHERA 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0671 494 MobiDBLite consensus disorder prediction 38 77 - -
Glsi05g0671 494 ProSiteProfiles Zinc finger Dof-type profile. 134 188 IPR003851 GO:0003677|GO:0006355
Glsi05g0671 494 PANTHER CYCLIC DOF FACTOR 2 3 493 IPR045174 GO:0003700|GO:0006355
Glsi05g0671 494 ProSitePatterns Zinc finger Dof-type signature. 136 172 IPR003851 GO:0003677|GO:0006355
Glsi05g0671 494 MobiDBLite consensus disorder prediction 275 303 - -
Glsi05g0671 494 MobiDBLite consensus disorder prediction 1 134 - -
Glsi05g0671 494 MobiDBLite consensus disorder prediction 78 121 - -
Glsi05g0671 494 MobiDBLite consensus disorder prediction 373 415 - -
Glsi05g0671 494 MobiDBLite consensus disorder prediction 276 300 - -
Glsi05g0671 494 MobiDBLite consensus disorder prediction 22 37 - -
Glsi05g0671 494 MobiDBLite consensus disorder prediction 373 401 - -
Glsi05g0671 494 Pfam Dof domain, zinc finger 131 188 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0671 Glsi-ChrGlsi05 57188303 57191383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0671 7 492 C2C2-Dof Transcription Factor Family AT5G39660 38.780 2.95e-92 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Glsi05g0671 zf-Dof 4.6e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g0671 05 57188303 57191383 Glsi02g0853 02 5480703 5482893 PCT