Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0294 ATGGATCCTTCAAGTGGACAACACCAGCAAATGCCTAGCCAGTCGCTGGAGAACATGTTAGGCTGTTCAAAGGCACAGCAGGAGAGGAAGCCAAGACCTCAGCCAGAACACGCCCTGAAATGCCCAAGATGCGACTCTTCTAATACCAAATTTTGTTACTACAACAATTACAGTCTCTCCCAGCCGAGATATTTCTGCAAGTCTTGCAGGAGATATTGGACCAAAGGAGGAACGCTGAGGAATGTTCCAGTGGGTGGAGGCTGCAGGAAGAATAGGAGGTCGTCATCTTCATCGTCAAAAAGGGTTCAAGATCAAGTCCTCACACCCAACACCAACCCACTCTCTAGCCTCCCAACATTATCTTACGACTCCGGCGACCTCACCCTTGCATTAGCTAGACTTCAAAAGCAATCATGTGGGCAATTGGGTTTTGGTGACCACGATCTCTCTAGGTTGGGGAATCCCACAAGCACCCATTGTGAAATTCTTGGCAATACCACAAACCCCGGATTTTTAGATGCCCTTCGTAGTGGGTTCCTTGAATCCCAGAATAATCTTCAGAATCTGTACTATGCATATGGAAATGGGGACTTGGGAGAGGTGGATAATGGCAGTGCTTGTGGGTTTAATGGGGTTAGTGGAGAGATGATGTTGCCATATGATCAAGAAGTGAGTAATGCCACGACTCAAGCAGTGACAGTCACTACCATGAAGCAGGAATTGTGCAATGACAGAGAACAAGGTGAAACGAGGGTGTTGTGGGGTTTTCCATGGCAGCTCAATGGAGACACAAACATGGGTGAAGTTGATTCAGGAAGAGCAAATTGGAATGGTCTCACGCAATCAAATTGGCATGGGCTTCTTAATAGTCCCCTAATGTAA 882 0.4694 MDPSSGQHQQMPSQSLENMLGCSKAQQERKPRPQPEHALKCPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNRRSSSSSSKRVQDQVLTPNTNPLSSLPTLSYDSGDLTLALARLQKQSCGQLGFGDHDLSRLGNPTSTHCEILGNTTNPGFLDALRSGFLESQNNLQNLYYAYGNGDLGEVDNGSACGFNGVSGEMMLPYDQEVSNATTQAVTVTTMKQELCNDREQGETRVLWGFPWQLNGDTNMGEVDSGRANWNGLTQSNWHGLLNSPLM 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0294 293 MobiDBLite consensus disorder prediction 90 119 - -
Glsi04g0294 293 ProSiteProfiles Zinc finger Dof-type profile. 39 93 IPR003851 GO:0003677|GO:0006355
Glsi04g0294 293 ProSitePatterns Zinc finger Dof-type signature. 41 77 IPR003851 GO:0003677|GO:0006355
Glsi04g0294 293 MobiDBLite consensus disorder prediction 1 22 - -
Glsi04g0294 293 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 16 187 IPR045174 GO:0003700|GO:0006355
Glsi04g0294 293 Pfam Dof domain, zinc finger 37 93 IPR003851 GO:0003677|GO:0006355
Glsi04g0294 293 MobiDBLite consensus disorder prediction 84 119 - -
Glsi04g0294 293 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0294 Glsi-ChrGlsi04 1905511 1906976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0294 37 293 C2C2-Dof Transcription Factor Family AT2G28510 41.971 3.83e-50 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Glsi04g0294 zf-Dof 2.3e-33 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g1747 14 17754560 17756033 Glsi04g0294 04 1905511 1906976 PCT