Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0962 ATGCAGGAAATACATTCGATTGGGGGAGGTAGATTTATCGGCGGGGGTGGAGAGAGGAGGCTGAGACCCCACCACCACCACAACAACAACAATCCCAATCACCCGGCCTTGAAGTGCCCCAGGTGTGACTCCTTCAACACCAAGTTCTGCTACTACAACAACTACAACCTCTCTCAGCCGCGCCATTTCTGCAAGAGCTGCCGTAGATACTGGACCAATGGCGGCGTCCTCCGCAACGTCCCCGTAGGTGGCGGTTGCCGTAAATCAAAGCGCTCCAAGCCCAAAAACTCTACCTCCTCGGAAACTGCAGCCGCACCACCATCATCACCTAAGGCGCCGGCGCAGTCGCAACCGGAGCATGAGCGTAAGTCGAACTCCCATTCCAGTAGCGAAAGCTTCAGTACTCTCACCGCCACCGCCACCGCCACGCCCACAGCCACAGAAGCGGTATCAGCGCCTTCATCGAACAGTGCGTCGGATAACTTGTTGGACAATATTCACGAGTCCAAGTTCTTCATCCATCCGAGTTCAACTTCGAACCCTAGTTTCGAACCGGGCATGCTGGAACAAGGAGGAGACTCCGGAATTTTCTCAGAGATAGGGAACTTAACGAGCTTGATGACATCGACGAACGAGGCATTGGCGTTTGGATATGGTAATATTTCGGATACGTTGTCGTTTCAGTTCAGCAGTGCTCCACAGGGGAATGATCCGCATAGTCAGATGAACATGGGTGATGATCATCAGGAATTGAAGTTTCCGACGTCGTTGATTGATCAGACGGTGGGAGTTGATTTGTCGGTGGAACAAAATAAAATGGGGCACGGAGGATACGGGTCGTTGGATTGGCAAGGGAGTACAGATCAAGGTTTGTTTGATCTTCCTAACACCGTAGATCAGGCTTATTGGAGTCACAGTCAGTGGACTGATCAGGGCAATCCTAGTCTCTTTCATCATCTGCCTTAA 966 0.5176 MQEIHSIGGGRFIGGGGERRLRPHHHHNNNNPNHPALKCPRCDSFNTKFCYYNNYNLSQPRHFCKSCRRYWTNGGVLRNVPVGGGCRKSKRSKPKNSTSSETAAAPPSSPKAPAQSQPEHERKSNSHSSSESFSTLTATATATPTATEAVSAPSSNSASDNLLDNIHESKFFIHPSSTSNPSFEPGMLEQGGDSGIFSEIGNLTSLMTSTNEALAFGYGNISDTLSFQFSSAPQGNDPHSQMNMGDDHQELKFPTSLIDQTVGVDLSVEQNKMGHGGYGSLDWQGSTDQGLFDLPNTVDQAYWSHSQWTDQGNPSLFHHLP 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0962 321 MobiDBLite consensus disorder prediction 1 37 - -
Glsi02g0962 321 MobiDBLite consensus disorder prediction 81 161 - -
Glsi02g0962 321 Pfam Dof domain, zinc finger 36 91 IPR003851 GO:0003677|GO:0006355
Glsi02g0962 321 ProSiteProfiles Zinc finger Dof-type profile. 37 91 IPR003851 GO:0003677|GO:0006355
Glsi02g0962 321 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 27 220 IPR045174 GO:0003700|GO:0006355
Glsi02g0962 321 ProSitePatterns Zinc finger Dof-type signature. 39 75 IPR003851 GO:0003677|GO:0006355
Glsi02g0962 321 MobiDBLite consensus disorder prediction 128 161 - -
Glsi02g0962 321 MobiDBLite consensus disorder prediction 96 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0962 Glsi-ChrGlsi02 6389446 6390411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0962 18 317 C2C2-Dof Transcription Factor Family AT5G60850 39.935 9.45e-53 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Glsi02g0962 zf-Dof 1.2e-32 No_clan