Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0853 ATGCAGGAAAGTAAAGACCCTGCAATTAAGCTCTTCGGACAGAAGATTCCGTTGCAGGGTGAAGGCGAGGATGTTACTATAATTGCCGGCGACGACTTGGCTTCACCGGTGGCGATTGGTGTGGACAGAGAAGGAGGAGAAGAAGAAGAGGATGAAGGCGACCGTGATGATGGAGGACAAAAAGGATCAGAAGAGGAAGAGGACGAATCAGACAAGGAATCTCTAGTTGGAATTGTTACTGAGAGCCCTAAAGGGAAAGAGGCTGAAACCCCTCTAGAGACCAACAATTTAGACACACTGCCAGAGGCTGGTGCGAACCCAAAAACACCTTCCATAGAGGAAGAAACTGCAAAATCGAAGAATGGCAAGTCAGAGAAGAATCAAACTGATGCAACCAACTCGCAAGAGAAAATCCTGAAGAAGCCAGATAAACTGCTTCCATGTCCTCGCTGCAACAGCATGGACACTAAGTTCTGTTACTATAATAACTACAATATCAATCAGCCTCGTCATTTCTGCAGAGCCTGTCAGAGATACTGGACTGCGGGTGGTACCATGAGGAATGTACCAGTGGGAGCAGGAAGAAGAAAGAACAAGAACTCTACCTCAAATTATCGCCATATCTCTATTTCTGAGGCTCTTCAAGCAGCCAGAATTGATGCTCCTAATGGAACTAATCTCCCCACTTTGAAAACCAATGGGAGAGTTCTCAGCTTTGGACTAGATGCACCTATTTGTGATTCCATGGCTTCTGTCCTGAATCTTGCAGAGAAAAATGGTATTAACAACAGGACCCGAAATGGGTATCATAGCTTTGAGAATCAGGGAATTCCAGTTCCTTGCAAAAGTGTGGAAAATGGTGATGACTGCACTAGTCCATCTTCCGTGGAAGAAAGTGGCAAAAGCATCACCCTTCAAGAATCGCTACTACGAAATAATGGTTTTCCTCCTCAAATTCCATGTCTACCTGGTGTTCATTGGCCTTATCCCTCACCTGCTCTGTGTCCACCAGGTTTTCCCATGCCATTCTACCCGGCAACTTTTTGGAATTTTGGTGTCCCGCTAAATTGGAACGCGCCCTGGTTTTCCTCACATTCGTCTGCTCCAACCCCAATGTCTCCAAGCTCAGGTCCAAATTCTCCAACGTTGGGGAAGCACTCGAGGGATGGAGACGTGCTTAAACCGGACTATCTCCAGAAAGAAGCATCATCAAAACAGAGAAACGGATGTGTTTTGGTTCCGAAAACTTTGAGAATCGATGACCCAAGTGAAGCAGCGAAGAGTTCTATATGGGCAACTCTGGGAATCAAGAATGAATCAGTGAGTAGGCGAGGCATGTTTAAGGCATTTGAATCAAAGAAGGACGAGAAGAAAGATGGCGTTGAAACGCCTTCAGCGTTGCGGGCTAACCCGGCAGCTTTGTCAAGATCCCTTAATTTTCACGAGAACTCCTGA 1455 0.4612 MQESKDPAIKLFGQKIPLQGEGEDVTIIAGDDLASPVAIGVDREGGEEEEDEGDRDDGGQKGSEEEEDESDKESLVGIVTESPKGKEAETPLETNNLDTLPEAGANPKTPSIEEETAKSKNGKSEKNQTDATNSQEKILKKPDKLLPCPRCNSMDTKFCYYNNYNINQPRHFCRACQRYWTAGGTMRNVPVGAGRRKNKNSTSNYRHISISEALQAARIDAPNGTNLPTLKTNGRVLSFGLDAPICDSMASVLNLAEKNGINNRTRNGYHSFENQGIPVPCKSVENGDDCTSPSSVEESGKSITLQESLLRNNGFPPQIPCLPGVHWPYPSPALCPPGFPMPFYPATFWNFGVPLNWNAPWFSSHSSAPTPMSPSSGPNSPTLGKHSRDGDVLKPDYLQKEASSKQRNGCVLVPKTLRIDDPSEAAKSSIWATLGIKNESVSRRGMFKAFESKKDEKKDGVETPSALRANPAALSRSLNFHENS 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0853 484 MobiDBLite consensus disorder prediction 366 383 - -
Glsi02g0853 484 ProSitePatterns Zinc finger Dof-type signature. 148 184 IPR003851 GO:0003677|GO:0006355
Glsi02g0853 484 MobiDBLite consensus disorder prediction 44 72 - -
Glsi02g0853 484 MobiDBLite consensus disorder prediction 452 484 - -
Glsi02g0853 484 PANTHER CYCLIC DOF FACTOR 2 1 484 IPR045174 GO:0003700|GO:0006355
Glsi02g0853 484 MobiDBLite consensus disorder prediction 28 140 - -
Glsi02g0853 484 Pfam Dof domain, zinc finger 144 200 IPR003851 GO:0003677|GO:0006355
Glsi02g0853 484 ProSiteProfiles Zinc finger Dof-type profile. 146 200 IPR003851 GO:0003677|GO:0006355
Glsi02g0853 484 MobiDBLite consensus disorder prediction 366 392 - -
Glsi02g0853 484 MobiDBLite consensus disorder prediction 470 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0853 Glsi-ChrGlsi02 5480703 5482893 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0853 1 482 C2C2-Dof Transcription Factor Family AT3G47500 45.383 6.71e-116 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Glsi02g0853 zf-Dof 2.9e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0853 02 5480703 5482893 Glsi13g1150 13 29147617 29150254 ECH
Glsi02g0853 02 5480703 5482893 Glsi02g0853 02 5480703 5482893 ECH
Glsi05g0671 05 57188303 57191383 Glsi02g0853 02 5480703 5482893 PCT