Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1988 ATGCAGTTTCTTCCACCCATGCTCTTGGGTCTCGTACTGTTCAGTGTGCTATGCCTAGTACAAACCAAATCCATCATTGAACCTTGCACCTCCTCAGACTCGTGCCCCTCACTTCTCTCTTATGTCTTGCCTTGGGACTCCAAGCTCTCTGAAATTGCATCTCGCTTCCATGTCAATGTTTCTGATATCCTTGCTGCAAACTCTGTCTTCCCCATAAAACCAACACTTGGGAATCAAATTCTCGGGGTCAAATCGCTTGTCAAAATACCTATTTCATGTCCTTGTGTGGCTGGTATTCGCAGGTCCATGTCCACCACTTATACTGTTCAAGCATCAGATACCCTTGACTCCATTTCTGATGGCTTTGGTAGGCTTGTTAGTCCTGAGCAGATAATGACCGTGAACAGCATCAATGCCACGAATCATTTGACAAATGGAGGAAGCCTTGTTATACCATTGCCTTGTACCTGTTTGAATAACGTCAACAATGGGGAAACCACAGTGTACATGTCATATGTGGTCCAGAAAGGAGAGAGATTGAGCACGATAGCAGCAATTTCTGGGACTACTATTTCAGACTTGGAGGTTATCAATGGGCTAGGCCAAGCTGCAGTTGAACCCGGAGACATACTAGCTGTTCCCATTGCAGCATGTTCTTCATCAGCTCAGAATTGGTACAACGAGAGTCTGATAGTTCCAAATGGCTCATATGCTTTAGCTGCCGCCGACTGCATCAAATGCACTTGTGGGCCAACTGATCTAAGGCTGCAATGTAATCCCTCTGGACTGGAAGTCCCCTGCTATAATTTAAAGTGCAAAGAATCCAATCTTGTAATTGGGGATGAATATGTGACATACTCAAAAACTGGTTGTAATGTGTCACAGTGTGTTTATCGTGGCCACAGAGGCGGTAAGATTCTTAGTAGTATGATGAATTCGTCTTATATCCGGTGCCCGGAGAATCAGAGTTATAATGGAGCATCGCGTTGGCCACCCTCAACAAACCAGGTAGTCCCATTTGTGATCTTGTCACCATGTTCACCACCCATGTCAGTTTCTGATGCAGCTCAGGCATCTCGTGGATCTCGTCGAGTTTCATTTATCAACGTGCTGCACTCGTACCTACCAGAAATACTCGCCCTTTGTTTTTTCCTGTGA 1158 0.4534 MQFLPPMLLGLVLFSVLCLVQTKSIIEPCTSSDSCPSLLSYVLPWDSKLSEIASRFHVNVSDILAANSVFPIKPTLGNQILGVKSLVKIPISCPCVAGIRRSMSTTYTVQASDTLDSISDGFGRLVSPEQIMTVNSINATNHLTNGGSLVIPLPCTCLNNVNNGETTVYMSYVVQKGERLSTIAAISGTTISDLEVINGLGQAAVEPGDILAVPIAACSSSAQNWYNESLIVPNGSYALAAADCIKCTCGPTDLRLQCNPSGLEVPCYNLKCKESNLVIGDEYVTYSKTGCNVSQCVYRGHRGGKILSSMMNSSYIRCPENQSYNGASRWPPSTNQVVPFVILSPCSPPMSVSDAAQASRGSRRVSFINVLHSYLPEILALCFFL 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1988 385 Pfam LysM domain 172 214 IPR018392 -
Glsi01g1988 385 Pfam LysM domain 107 152 IPR018392 -
Glsi01g1988 385 Pfam LysM domain 49 68 IPR018392 -
Glsi01g1988 385 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 9 322 - -
Glsi01g1988 385 Gene3D LysM domain 160 226 IPR036779 -
Glsi01g1988 385 CDD LysM 105 151 IPR018392 -
Glsi01g1988 385 Gene3D LysM domain 101 159 IPR036779 -
Glsi01g1988 385 ProSiteProfiles LysM domain profile. 170 213 IPR018392 -
Glsi01g1988 385 ProSiteProfiles LysM domain profile. 105 151 IPR018392 -
Glsi01g1988 385 CDD LysM 171 213 IPR018392 -
Glsi01g1988 385 SUPERFAMILY LysM domain 170 214 IPR036779 -
Glsi01g1988 385 SUPERFAMILY LysM domain 105 153 IPR036779 -
Glsi01g1988 385 SMART LysM_2 106 152 IPR018392 -
Glsi01g1988 385 SMART LysM_2 171 214 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1988 Glsi-ChrGlsi01 83243073 83244888 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1988 7 324 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 45.794 2.18e-84 261