Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0865 ATGGTCTTCCCATCCATTCCAGTCTATCTAGATCCACCCAACTGGGCTCAACAGCAACCTAATCAGCAGTCGGGAGTTGCTACCCAGAATCTTCAGGTTCCACCTCCACAGCAGCCGCCACCTTCAATCGTTGTTGTTGGAGGTGGCGGCCACCAAGGCTCGACCAGACCAGGATCAATGACCGATCGAGCTCGGCTAGCCAAAATAACGCAGCCAGAAGCAGCACTCAAATGCCCACGATGTGAATCGACGAATACCAAGTTCTGCTACTATAACAATTACAGCCTTTCACAGCCTCGCCACTTCTGCAAGACTTGCCGGCGTTACTGGACCAGAGGTGGTGCACTGAGAAATGTCCCAGTTGGAGGTGGCTGCAGAAGGAACAAAAGAAGCAAAATAACCAGTAGATCAAAATCTCTGACCAAAGCTGGTCATGGCCAAGCTGGTTCGTACTCTACAAGTGCAAATTCTTCTAGTGGCTGCCCTAGTGATGCAATAGGTCATTTGCCAAGTCCAGCCCCAGCTGAATTACTCTTGCCCACTTCTCATCATTATAGTGATTACGTTTCCGGGAGCATTGGCTTACATTTTGGGGCAATTCTGCCGCCGGCACCGGTGGTTTCAACAAATGGCAACGTTGTTGGCAGCGATGCTGAATTTCATATTGGTTCTAGTTCAGGTGGTGACTATAATTGTGGCCCTATATTGTCAAACGGCCTCACTGATCAATGGAAGCTGCCAATGCCTAGTCTGCAACATGTTCATCATCAGCCTCAACAGTTTCCATTCATGACCAATTTGGAACCGCCGATTGGGTCATATCATCAGTCTGAAAGAGAACATGCAGAACCCCCAAGTTATGGAGTCCAGCTTCGGTCTAAGACATTATATTCTAGTGCTAGTGGATTACCTCAGCTTACTTCAGTTAAAATGGAAGAAAATCAAGTGTTGGGTTTGTCAAAGAATATTTTGGGTAGTTCAGGAGATGAACAATTCTGGGCTGTAAATGGTAATGACTGGAATGACATTCCCACTTTCACTTCAACCAACCATCTCCTGTGA 1062 0.4718 MVFPSIPVYLDPPNWAQQQPNQQSGVATQNLQVPPPQQPPPSIVVVGGGGHQGSTRPGSMTDRARLAKITQPEAALKCPRCESTNTKFCYYNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSKITSRSKSLTKAGHGQAGSYSTSANSSSGCPSDAIGHLPSPAPAELLLPTSHHYSDYVSGSIGLHFGAILPPAPVVSTNGNVVGSDAEFHIGSSSGGDYNCGPILSNGLTDQWKLPMPSLQHVHHQPQQFPFMTNLEPPIGSYHQSEREHAEPPSYGVQLRSKTLYSSASGLPQLTSVKMEENQVLGLSKNILGSSGDEQFWAVNGNDWNDIPTFTSTNHLL 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0865 353 ProSiteProfiles Zinc finger Dof-type profile. 76 130 IPR003851 GO:0003677|GO:0006355
Glsi01g0865 353 MobiDBLite consensus disorder prediction 120 156 - -
Glsi01g0865 353 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 54 179 IPR045174 GO:0003700|GO:0006355
Glsi01g0865 353 MobiDBLite consensus disorder prediction 12 32 - -
Glsi01g0865 353 MobiDBLite consensus disorder prediction 137 156 - -
Glsi01g0865 353 ProSitePatterns Zinc finger Dof-type signature. 78 114 IPR003851 GO:0003677|GO:0006355
Glsi01g0865 353 Pfam Dof domain, zinc finger 75 130 IPR003851 GO:0003677|GO:0006355
Glsi01g0865 353 MobiDBLite consensus disorder prediction 12 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0865 Glsi-ChrGlsi01 18424309 18425592 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0865 40 352 C2C2-Dof Transcription Factor Family AT3G55370 39.339 6.92e-50 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Glsi01g0865 zf-Dof 9e-33 No_clan