Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0028 ATGGGTTTTGGGAATAACAAGGTGGTTCTTCTTCTACGGTTATTGTTTGTAATCATATGCGCTCTTGCTGCCACATCAAGGGGCGTGGAGGCTCAGCCAGCGGCGGTGTTCAAGTGCGGCACAGAAGGCCAGAAATGTCGTGCCCTCGTCGATTATGTGTCCCCAAACACCACCACTTTAAGCGACATTCAAAAACTCTTCAGCGTTACCAACCTGCTGGACATAGTGGGCGCTAACGGGCTGCCCGGAACCACCCTAGGCAACCACCGCGTAAAAGCGAAGCAGATAATAAAAATCCCGTTCCAGTGCATGTGTAGCAACGGCACAGGATTGTCCAATAAGCTGCCAATTTACACGATCATTAAAGATGACGGGCTGTGGCACATAGCGAATGAGGTGTATTCGGGTTTGGTGACGGACCAACAAATCGGACAAGTGAACAACATACCGGACCTGAACAAGATCCAGGAGGGGCAGAAGGTGTGGATTCCACTCCCTTGCAGCTGCGATGAGGTGAACGGAAGCAGTGTTGTTCACTATGGACACCTGGTGGCATCTGGGAGCTCCGTTGAACAGATTGCTCAACAATACGGCACCAATCAGAACACCCTCCTCACTCTCAATAATATGACTGATCCCAAGAAGCTCCAAGCTGGTCAAATTCTCGATGTTCCCCTCAAAGCTTGTTCCTCCTCGGTGGTGCATTCTGACTCATTGGACTCCCCTTTGGTCGTTGCAAATGGTACTAACCTCTACACTGCCAATGGCTGCGTCAAGTGCAACTGCGACTCCGCCAACAACTTGACATTACACTGCGAGCCATCCCAACTTAAACCGACGGAGTGGCCTACTTGCCCATCTATGCAATGCGGCAAGTCAACCAACGTCGTCATTGGCAACATCACTTCTGTAACTTCCTGCAATCGCACTTCTTGTGCCTACGCTGGTTATTATAACAATCAAACTATTCTGACCACTCTTGCCACCCAGTCCACTTGTCCTGCAGCACCATCAGGAGTATCGGGGAGCAGCTTGCGAGGCTGGGGTTGGAATAATCTTTTTATTTTCACCCTCTTTTGTGTCTATCTTATGTTGTAA 1098 0.4973 MGFGNNKVVLLLRLLFVIICALAATSRGVEAQPAAVFKCGTEGQKCRALVDYVSPNTTTLSDIQKLFSVTNLLDIVGANGLPGTTLGNHRVKAKQIIKIPFQCMCSNGTGLSNKLPIYTIIKDDGLWHIANEVYSGLVTDQQIGQVNNIPDLNKIQEGQKVWIPLPCSCDEVNGSSVVHYGHLVASGSSVEQIAQQYGTNQNTLLTLNNMTDPKKLQAGQILDVPLKACSSSVVHSDSLDSPLVVANGTNLYTANGCVKCNCDSANNLTLHCEPSQLKPTEWPTCPSMQCGKSTNVVIGNITSVTSCNRTSCAYAGYYNNQTILTTLATQSTCPAAPSGVSGSSLRGWGWNNLFIFTLFCVYLML 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0028 365 Gene3D LysM domain 172 237 IPR036779 -
Glsi01g0028 365 SMART LysM_2 117 164 IPR018392 -
Glsi01g0028 365 SMART LysM_2 181 225 IPR018392 -
Glsi01g0028 365 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 10 336 - -
Glsi01g0028 365 CDD LysM 117 163 IPR018392 -
Glsi01g0028 365 CDD LysM 182 224 IPR018392 -
Glsi01g0028 365 Gene3D LysM domain 116 171 IPR036779 -
Glsi01g0028 365 ProSiteProfiles LysM domain profile. 180 224 IPR018392 -
Glsi01g0028 365 ProSiteProfiles LysM domain profile. 116 163 IPR018392 -
Glsi01g0028 365 Pfam LysM domain 118 164 IPR018392 -
Glsi01g0028 365 Pfam LysM domain 183 225 IPR018392 -
Glsi01g0028 365 SUPERFAMILY LysM domain 181 225 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0028 Glsi-ChrGlsi01 374567 377928 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0028 29 337 LysM Receptor-like Protein (LYPs) Gene Family AT2G17120 48.875 1.53e-93 281