Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi959g00003 ATGCCGTCATCGGATTCCGGCGAGAGCCGCCGAGCAACCAAGCCCCAGAACACCGTCGGAGCAGCACCGCCCCCGGAGCAAGAGAACCTTCCGTGCCCTCGCTGCGACTCCACCAACACCAAGTTCTGCTACTACAACAACTACAACTACTCCCAGCCCCGCCACTTCTGCAAGTCTTGTCGCCGGTACTGGACTCACGGTGGCACGCTCCGTGACATCCCCGTCGGCGGTGCCAGCCGGAAAAACTCCAAACGCTCCCGCACCCACCATGCCACTGTCACATCTTCCTCTTCACCACAGGACCACCCCTCGCGTGCGGCGGCGCCGCCCATCGCCGCCAACCAAGGAGGGTCGATGCAGTTCGGTGGTGGAGTTGATGGTGATGTCAAACAGAACGTGAATATTTGCGGGAGCTTCACTTCTTTGCTGAACAACACCCAAGGTTCTGGCTTTCTAACTGTGGGTGGGTTTGGGCTTGGGTTAGAGGAAATGGGGTTTGGGATTGGGAGAGCGGGTTGGGTTTTGCCGGGAATGATGAATGGAGCTAACATTGGCGGCGGCGTAGTGGCTTCCGGCGCCGGAAACACGTGGCAGTTTGAAGGTGGCGAAGGTGGGTTTGTGGGTGGAGACTGCTTCTCTTGGCCGGGACTCGCGATTTCAACACCAGGAAATGTTCTGAAATGA 684 0.5863 MPSSDSGESRRATKPQNTVGAAPPPEQENLPCPRCDSTNTKFCYYNNYNYSQPRHFCKSCRRYWTHGGTLRDIPVGGASRKNSKRSRTHHATVTSSSSPQDHPSRAAAPPIAANQGGSMQFGGGVDGDVKQNVNICGSFTSLLNNTQGSGFLTVGGFGLGLEEMGFGIGRAGWVLPGMMNGANIGGGVVASGAGNTWQFEGGEGGFVGGDCFSWPGLAISTPGNVLK 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi959g00003 227 ProSiteProfiles Zinc finger Dof-type profile. 30 84 IPR003851 GO:0003677|GO:0006355
Gabi959g00003 227 MobiDBLite consensus disorder prediction 71 124 - -
Gabi959g00003 227 Pfam Dof domain, zinc finger 28 84 IPR003851 GO:0003677|GO:0006355
Gabi959g00003 227 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 17 146 IPR045174 GO:0003700|GO:0006355
Gabi959g00003 227 MobiDBLite consensus disorder prediction 1 32 - -
Gabi959g00003 227 MobiDBLite consensus disorder prediction 89 103 - -
Gabi959g00003 227 MobiDBLite consensus disorder prediction 1 23 - -
Gabi959g00003 227 ProSitePatterns Zinc finger Dof-type signature. 32 68 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi959g00003 Gabi-Chr959 80126 80809 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi959g00003 1 227 C2C2-Dof Transcription Factor Family AT3G50410 46.640 1.72e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gabi959g00003 zf-Dof 1.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi959g00003 - - cam:101488684 338.576