Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi941g00011 ATGGACACAGCTCAGTGGGCACAGGGGATTGGAGTGGTTAAACCTATGGAAGGTTCAAAGCCTAATCCTATGTTGGAGAGAAAAGCAAGGCCTCAGAAAGATCAAGCTTTGAACTGTCCAAGGTGCAATTCAACAAACACTAAGTTCTGTTACTACAATAACTATAGCCTCTCTCAGCCAAGGTACTTTTGCAAGACTTGTAGAAGGTATTGGACTGAAGGTGGTTCTTTAAGAAACGTTCCTGTTGGTGGTGGCTCAAGAAAGAACAAGAGATCCACACCATCAGCAACAACATCAACTTCATCCTCAGCTCCAATATCAACAAAGAAGCTTCCTGATCTGACAACACAGAATTTCCCTCAATCTGCTTCTCAAAACCCAAAGATCCATCAAGGCCAAGATCTTAACTTAGCATATCCACCAGCTGAGGACTACAACAGCATATCTAAATTTATTGAGGTTCCTTACAGCACTGAAGACAAGAATCATATTAATCACAACCTTCAAAACCCAAGTTCTTCTTCAACATCTTCTCATCATCAGTTGTCTGCTATGGAGCTTCTCAAAACTGGGATTACTTCTTCAAGGGGTTTAAATTCTTTCATGCCCATGTCGTTATCGGATTCAAGTACAATGTATAATTCATCTGGGTTTCCTTTGCAAGACTTTAAGCCTGGCCTTAACTTCAGTCTTGAGGGATTTGAAAATGGCTATGGTGGTCTTCAGGGAATTCAAGAGGGTGCTGGTGCAAGGATCTTGTTTCCTGTGGAGGATTTGAAGCAGCAGGTTCCAGGCACCACTGAGTTTGAACAGAATAGAAATCAAGGGGATTCAACTGTGTATTGGAATGGCATGTTAGGTGGAGGATCATGGTAG 876 0.4212 MDTAQWAQGIGVVKPMEGSKPNPMLERKARPQKDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSTPSATTSTSSSAPISTKKLPDLTTQNFPQSASQNPKIHQGQDLNLAYPPAEDYNSISKFIEVPYSTEDKNHINHNLQNPSSSSTSSHHQLSAMELLKTGITSSRGLNSFMPMSLSDSSTMYNSSGFPLQDFKPGLNFSLEGFENGYGGLQGIQEGAGARILFPVEDLKQQVPGTTEFEQNRNQGDSTVYWNGMLGGGSW 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi941g00011 291 MobiDBLite consensus disorder prediction 86 131 - -
Gabi941g00011 291 MobiDBLite consensus disorder prediction 78 131 - -
Gabi941g00011 291 ProSitePatterns Zinc finger Dof-type signature. 39 75 IPR003851 GO:0003677|GO:0006355
Gabi941g00011 291 ProSiteProfiles Zinc finger Dof-type profile. 37 91 IPR003851 GO:0003677|GO:0006355
Gabi941g00011 291 Pfam Dof domain, zinc finger 34 91 IPR003851 GO:0003677|GO:0006355
Gabi941g00011 291 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 25 186 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi941g00011 Gabi-Chr941 114869 117087 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi941g00011 24 291 C2C2-Dof Transcription Factor Family AT3G61850 46.181 4.63e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gabi941g00011 zf-Dof 1.2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi941g00011 - - lja:Lj0g3v0363619.1 437.958