Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi934g00005 ATGGAGAGTGAGTGGAAGCCTAATAATGTTGAGATATCACCAAATTGTCCAAGGTGTGGTTCTTCCAACACCAAGTTCTGCTACTACAATAACTATAGCTTAACTCAACCAAGGTACTTTTGCAAAGGCTGCAGAAGGTACTGGACTAAAGGTGGGTCCCTCCGCAATGTTCCTGTTGGTGGTGGATGCAGGAAAAATAGAAGAGGTAATAAGACCTTAAGACAATCCATTGATGGTCTCACTTTCAAAAATTCACCTTGTGGTGATGCAATGCATTCTTATGATCCTACAAGGATTTCACCTTCTAGTTCCTCAGTTGTGACTGATGGACCAAATATTGATCTTGCTCTAGTTTATGCAAATTTCCTCAATCAAAAGCCTGATTCTGGAGCTGCAGGGCTTGACCCTTCTCTAGAAAATTCAAGACCATCATTGAACACAGAAGTTGGTCCAAGTAACTTGCTTCAAGAACACGGTCTTAGTGGCTGTTTGCATCTTCCTGAACAACCATCTACAGAACCCCATTTTAGTGAGTGTAATCACCAAATGTACCATAGAGATTTCGACTCTATACAGGCTCATCAAGAAGATAGAATTGAGCAATGCAGTGGTCATGATACAATGAATTTTGAGCTGCCACCTTTGCCAGGTGAAGAGGAAGGTTCACATGATATGATGTGGTCTAATTCTGAGATGATGGTAAACCATTCATTTCAAGTACCCCAACCACCACTTCTTGGACCTGAAGCTCATGATGCAGAATTGTTAATTGGTAATTGGAACCCCTTTGATTTGCCAAGGGATGCTTTTTTTTCCAGGCCTTGA 825 0.4145 MESEWKPNNVEISPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRGNKTLRQSIDGLTFKNSPCGDAMHSYDPTRISPSSSSVVTDGPNIDLALVYANFLNQKPDSGAAGLDPSLENSRPSLNTEVGPSNLLQEHGLSGCLHLPEQPSTEPHFSECNHQMYHRDFDSIQAHQEDRIEQCSGHDTMNFELPPLPGEEEGSHDMMWSNSEMMVNHSFQVPQPPLLGPEAHDAELLIGNWNPFDLPRDAFFSRP 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi934g00005 274 MobiDBLite consensus disorder prediction 139 153 - -
Gabi934g00005 274 MobiDBLite consensus disorder prediction 131 153 - -
Gabi934g00005 274 Pfam Dof domain, zinc finger 15 68 IPR003851 GO:0003677|GO:0006355
Gabi934g00005 274 ProSitePatterns Zinc finger Dof-type signature. 16 52 IPR003851 GO:0003677|GO:0006355
Gabi934g00005 274 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 12 193 IPR045174 GO:0003700|GO:0006355
Gabi934g00005 274 ProSiteProfiles Zinc finger Dof-type profile. 14 68 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi934g00005 Gabi-Chr934 177844 178668 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi934g00005 5 269 C2C2-Dof Transcription Factor Family AT3G52440 41.429 1.20e-52 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gabi934g00005 zf-Dof 4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi934g00005 - - aprc:113871380 395.201