Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi588g00016 ATGCCGTCGTCGGACTCCGGCGAAAACCGTCGACCAAGCAAGACCCAAAACCCTGGAGCTCCGCCACCAGAACAAGAGCACCTCCCATGCCCTCGATGCGATTCGACAAACACCAAGTTCTGCTACTATAACAACTACAATTTCTCCCAGCCACGTCACTTCTGCAAGTCTTGCCGCCGTTACTGGACTCATGGGGGCACCCTTCGCGACATTCCCGTCGGTGGTGGCAGTCGCAAAAACGCCAAACGCTCTCGTACTGTTTCTGCAATCTCCTCCTCCTCCGCCGTGACTTCGGCGGCTGCTCATCAGGATCACCCCTTGTCTGCAACCCCAGTATTAGTGCCCATTCAAGGAGGGTCTATGCAGTTCGCCGGTACTGGCAGTGTTGATGGTGTTGGTGAAATGAAGCCAAATATGAACATGTGTGGGAGCTTCACTTCCTTGCTCAACAACCCCCAAGGACCTGGCTTTCTTGCTCTTGGTGGGTTTGGGCTTGGACTCGGGCACGGACACGGGCTTGGGTTTGAAGATGTGGGGTTTGGAATGGGGAGACCAGGCTGGAATTTCCCCGGAATTCCAGATGGCAGTAACATTGGCGGTGGTGTTGCTGCTCCCGGTGCCGGAAATTCATGGCAGTTTGAAAACGGCGAAGGTGGGTTTGTAGGTGGAGACTGCTTCTCATGGCCTGGACTAGCGATTTCAACACCTGGAAATGGTCTCAAATGA 726 0.5455 MPSSDSGENRRPSKTQNPGAPPPEQEHLPCPRCDSTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGGSRKNAKRSRTVSAISSSSAVTSAAAHQDHPLSATPVLVPIQGGSMQFAGTGSVDGVGEMKPNMNMCGSFTSLLNNPQGPGFLALGGFGLGLGHGHGLGFEDVGFGMGRPGWNFPGIPDGSNIGGGVAAPGAGNSWQFENGEGGFVGGDCFSWPGLAISTPGNGLK 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi588g00016 241 ProSiteProfiles Zinc finger Dof-type profile. 28 82 IPR003851 GO:0003677|GO:0006355
Gabi588g00016 241 MobiDBLite consensus disorder prediction 1 15 - -
Gabi588g00016 241 Pfam Dof domain, zinc finger 26 82 IPR003851 GO:0003677|GO:0006355
Gabi588g00016 241 ProSitePatterns Zinc finger Dof-type signature. 30 66 IPR003851 GO:0003677|GO:0006355
Gabi588g00016 241 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 17 120 IPR045174 GO:0003700|GO:0006355
Gabi588g00016 241 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi588g00016 Gabi-Chr588 273474 274410 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi588g00016 1 241 C2C2-Dof Transcription Factor Family AT3G50410 51.953 2.47e-66 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gabi588g00016 zf-Dof 3.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi588g00016 - - qsa:O6P43_033783 316.62