Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4436g00037 ATGTATCTAGTTCAAACAAAATCCACTATTGAACCATGTAACTCCTCAGACTCCTGCCCCTCTCTTCTCTCTTATCTTTTGCCTTGGGACTCCAAGCTCTCTGAAATTGCAACTCGCTTCCATGTAAATATTTCTGATATCTTGGCTGCAAACTCTGTCTACCCCATAACACCATCATGTGCACATAGAATCCTTGGTGCCAAATCGATAGTAAAAATACCAATTTCATGTCCTTGTCTGAATGGTATCCGAAGGTCTATGTCAACCATTTACACTGTTGAGGCAGCTGATACCCTTGCATCCATATCAGATGGTTATGGTGGGCTAGTTGGTGCTGAACAAATTCAGATTGTGAATGGCATCAATGCTACAAACCCGTTGACAAATGGAGGCAGCCTTATTATACCATTGCCATGCACATGTTTCAACAATGTCAACAATGGGGGAACAGCAATTTATATTTCATATGTGGTGCAGAAGGAGGAGAGCTTAGGAAGCATAGCAACAGTTTTTGGTACTACTATTTCAGACTTGGAAACTGTAAATGGTCTTGGCCAAGCTGCAGTAGATCCAGGAGACATACTATCTGTTCCTATTGCAGCATGTTCATCAGCAACTCTAAATTGGTATAATGAAAGTCTGATTGTACCAAATGGATCATATACTTTAACTGCCAGCAACTGCATCAAATGCACTTGTGCACCAATAGATCTCAAGATGCAATGTCTTCCTTCTGCACTGGATATCCCTTGCTATAATTTACGTTGCAAAGGATCCAATCTTGTTATTGGGGATGAATATGTGGAACATTCCAAGACTGGTTGCAATGTGAGCCAGTGTGTTTACCGTGGCCATAGGGGTGGCAAAATTCTGAGTAGTATGATGAACTTTTCTTACCTCCAGTGCCCGGCTAATCTAAGTAATAGTGGAGCATCATGTTGGCCTTCCCCATCACCATATCCTGCAGAGCCCTTGCCAGTTTCTGTGGCTGCTCCGAGAACTCATGGCCCTGGTGGAAGGCTTGGTCAATTTTTAACCATTGTATTGCAGTTGTTCTTGCCAAAACTTATCCTTTATTTTCTCATTTGA 1089 0.4206 MYLVQTKSTIEPCNSSDSCPSLLSYLLPWDSKLSEIATRFHVNISDILAANSVYPITPSCAHRILGAKSIVKIPISCPCLNGIRRSMSTIYTVEAADTLASISDGYGGLVGAEQIQIVNGINATNPLTNGGSLIIPLPCTCFNNVNNGGTAIYISYVVQKEESLGSIATVFGTTISDLETVNGLGQAAVDPGDILSVPIAACSSATLNWYNESLIVPNGSYTLTASNCIKCTCAPIDLKMQCLPSALDIPCYNLRCKGSNLVIGDEYVEHSKTGCNVSQCVYRGHRGGKILSSMMNFSYLQCPANLSNSGASCWPSPSPYPAEPLPVSVAAPRTHGPGGRLGQFLTIVLQLFLPKLILYFLI 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4436g00037 362 CDD LysM 154 197 IPR018392 -
Gabi4436g00037 362 ProSiteProfiles LysM domain profile. 89 135 IPR018392 -
Gabi4436g00037 362 Pfam LysM domain 91 136 IPR018392 -
Gabi4436g00037 362 Pfam LysM domain 156 198 IPR018392 -
Gabi4436g00037 362 Pfam LysM domain 33 54 IPR018392 -
Gabi4436g00037 362 SMART LysM_2 90 136 IPR018392 -
Gabi4436g00037 362 SMART LysM_2 155 198 IPR018392 -
Gabi4436g00037 362 SUPERFAMILY LysM domain 154 198 IPR036779 -
Gabi4436g00037 362 ProSiteProfiles LysM domain profile. 154 197 IPR018392 -
Gabi4436g00037 362 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 3 305 - -
Gabi4436g00037 362 Gene3D LysM domain 83 145 IPR036779 -
Gabi4436g00037 362 Gene3D LysM domain 146 208 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4436g00037 Gabi-Chr4436 320149 323949 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4436g00037 2 338 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 41.888 5.40e-84 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4436g00037 - - gmx:100819382 572.392