Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4175g00006 ATGAATGGACTTGAAGAATCAACTAATGCTGAAGTGGATGTTCCTATGAAGGAAGTATCAGGCAAAGAGACTGATCCTCAAGAAGATGCTAATAAATGTCCTACTGTGAAACTGGTGGCCAAAGTAGTACATAGAACTAATGAAGACATGACTACTAAAAGAGAAGTGGATCATGAAGAAAAAGTTTTCAAGAAGCCAGACAAGGTCCTGCCATGTCCTCGCTGCAATAGTTTGGAAACAAAGTTTTGCTATTTCAACAATTACAATGTTAACCAACCTAGACATTTCTGCAAAAATTGCCAGAGATATTGGACAGCTGGGGGAACAATTAGAAATGTTCCTGTTGGTGCTGGTAAGCGCAAAAGTAAGCATTTACCTGTGACCCCTAATGCAGTATCTGATATGCATCTCTTATCTATGACTTCAAGACCTGTTAATGGAATGGAGAACATCCCTAGTCTCAATGAGGAAGCTCCTCTTAGTGAAACCCTTGAAACTATGTTAAATCTCAAGGACCAGACAAAAATTGAAGTGGACTCTTCTACTGTCAATGATGATGATGAGGAGCATTCCAGCACTTCTATGAGATCTGTTGAATCCTTGGAGAAGGTTGGTTTGTCACAACACTGCAATGGTTTAATTCCTTTAAATTCAGTTCAATATTATCCTGTTCCTCCATGGGCTTACCAATGGAATCCATGTTGGAATGCTATGATGTTTAGCCCCAGTAGCATAACTAATAGCCCTTCTTACATGGGTTCTGCAACCATGATGGCAGTTCCTGGCTTCTCCACACCAACTGTAGAATTACCAGTGTCACCTGCTTCATATTGGGGTTGCATGCCAAACTGGGCTGGGCAAAATGAAGAGTCTTCATTGGTTGGATCTTCTACAATTAGTGGCATCCTATCACCTTCATCTTCAGTTAGCAACTGTGCCAGTTCTGGTAATAGGTCTCCAACCTTAGGAAAACATTCTAGAGATGGAAGTACACCAGCAGAAGATACAGTGAAACAGAATCTTTGGGTACCTAAGACTGTAAGAATTAATGATCCAGAAGAGGCTGCAAAGAGTTCTATATGGTCAACTTTGGGAACAAAGTCTGAACAGAACAAACCCATTATGAAAGGAAGTGTTTTTAAATCATTTGAACCTAAGTCAAATGCAAGTTCTCATATTTTAGATGATAATCAAATTCTAAGGGCAAACCCTGCTGCTTTCTCTCGGTCTGAATCTTTTCAGGAAAACATGTAA 1254 0.3987 MNGLEESTNAEVDVPMKEVSGKETDPQEDANKCPTVKLVAKVVHRTNEDMTTKREVDHEEKVFKKPDKVLPCPRCNSLETKFCYFNNYNVNQPRHFCKNCQRYWTAGGTIRNVPVGAGKRKSKHLPVTPNAVSDMHLLSMTSRPVNGMENIPSLNEEAPLSETLETMLNLKDQTKIEVDSSTVNDDDEEHSSTSMRSVESLEKVGLSQHCNGLIPLNSVQYYPVPPWAYQWNPCWNAMMFSPSSITNSPSYMGSATMMAVPGFSTPTVELPVSPASYWGCMPNWAGQNEESSLVGSSTISGILSPSSSVSNCASSGNRSPTLGKHSRDGSTPAEDTVKQNLWVPKTVRINDPEEAAKSSIWSTLGTKSEQNKPIMKGSVFKSFEPKSNASSHILDDNQILRANPAAFSRSESFQENM 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4175g00006 417 ProSiteProfiles Zinc finger Dof-type profile. 70 124 IPR003851 GO:0003677|GO:0006355
Gabi4175g00006 417 ProSitePatterns Zinc finger Dof-type signature. 72 108 IPR003851 GO:0003677|GO:0006355
Gabi4175g00006 417 MobiDBLite consensus disorder prediction 1 33 - -
Gabi4175g00006 417 Pfam Dof domain, zinc finger 67 124 IPR003851 GO:0003677|GO:0006355
Gabi4175g00006 417 MobiDBLite consensus disorder prediction 16 30 - -
Gabi4175g00006 417 MobiDBLite consensus disorder prediction 306 326 - -
Gabi4175g00006 417 PANTHER CYCLIC DOF FACTOR 2 23 416 IPR045174 GO:0003700|GO:0006355
Gabi4175g00006 417 MobiDBLite consensus disorder prediction 306 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4175g00006 Gabi-Chr4175 57342 60165 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4175g00006 59 415 C2C2-Dof Transcription Factor Family AT5G39660 38.501 7.77e-64 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gabi4175g00006 zf-Dof 3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4175g00006 - - gmx:102666857 580.096