Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3820g00066 ATGGTCTTCCCATCCCTTCCAATCTATCAAGATCCACCCAACTGGTCACAACATCAACCTAATCAGCAGCAAGCAGGAATTGGAAACCAGATTCCACTACCTCCTCAGCCACAACCTTCAAGCGTAGCCGTTGGATCATCAGGTGGTTGTTACCAAGGGTCTATAAGACCAGGATCAATGGCTGATAGAGCTCGGTTAGCAAAGATTCACCAACCAGATGCATCACTGAAATGTCCACGATGTGAATCAACAAACACAAAGTTCTGTTACTATAATAACTACAGTCTTTCACAGCCTCGCCATTTTTGCAAGACTTGCCGTCGTTACTGGACAAGAGGAGGTGCACTCAGAAACGTTCCTGTTGGTGGTGGCTGTAGAAGAAACAAAAGAACCAAAGGAACCACTACTTCAAAATCTTCTATGAAAGCTTCTGGTTCTACTTCTGCAAGTGCAAATTCTTCTTCTAGTGGCTGCACTAATGATGTGTTGGGTCATTTGCCAAATCAATTACCATTCTTGGCTTCTTTGCATCATTATAGTACTAGTGACTTTGTTTCTGGGAACATTGGCTCGCATTTTGGGGCAATCCCAACAACATCGTTGGTGGCAAGAAATGGCAACAATACTAGTACTGAGTTTCAAGTTGGTACTACTAGTTCATCACTTGGTAATAATGGTAGTTCTGTGATGTCAAATGGACTTGGTGACCAATGGAGGTTTCCCAATCTGCAACAAGTTCATCATCATCATCATCAGCAGCAGCAGCAGCAGCATCAACAGTTCCCTTTTATGACTAATCTGGAACCACAAATTGGGTTGTTTCAGTTTGGTGGAGAAAATGCTGAACAGCCAAGTTATGTAATAAAAGATGGTGGCAGGTTTCGTAATTTTAAGGCAATGGATTCTAGTGTAAGTGGAATAAAAATGGAAGAAAATCAAGGGTTGAGTTTGCCAAAAAATGTCTTGAGTAGTTCAGGAAATGATCTATTTTGGACTTCAAGTGGCAATAATGCATGGAGTGAAGTTCCTAGCTTCACTCCTCCAACGAACCACTTATTGTGA 1062 0.419 MVFPSLPIYQDPPNWSQHQPNQQQAGIGNQIPLPPQPQPSSVAVGSSGGCYQGSIRPGSMADRARLAKIHQPDASLKCPRCESTNTKFCYYNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRTKGTTTSKSSMKASGSTSASANSSSSGCTNDVLGHLPNQLPFLASLHHYSTSDFVSGNIGSHFGAIPTTSLVARNGNNTSTEFQVGTTSSSLGNNGSSVMSNGLGDQWRFPNLQQVHHHHHQQQQQQHQQFPFMTNLEPQIGLFQFGGENAEQPSYVIKDGGRFRNFKAMDSSVSGIKMEENQGLSLPKNVLSSSGNDLFWTSSGNNAWSEVPSFTPPTNHLL 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3820g00066 353 ProSitePatterns Zinc finger Dof-type signature. 78 114 IPR003851 GO:0003677|GO:0006355
Gabi3820g00066 353 ProSiteProfiles Zinc finger Dof-type profile. 76 130 IPR003851 GO:0003677|GO:0006355
Gabi3820g00066 353 MobiDBLite consensus disorder prediction 121 157 - -
Gabi3820g00066 353 Pfam Dof domain, zinc finger 74 130 IPR003851 GO:0003677|GO:0006355
Gabi3820g00066 353 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 57 257 IPR045174 GO:0003700|GO:0006355
Gabi3820g00066 353 MobiDBLite consensus disorder prediction 134 157 - -
Gabi3820g00066 353 MobiDBLite consensus disorder prediction 10 31 - -
Gabi3820g00066 353 MobiDBLite consensus disorder prediction 10 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3820g00066 Gabi-Chr3820 522671 524510 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3820g00066 39 340 C2C2-Dof Transcription Factor Family AT3G55370 37.304 8.98e-46 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gabi3820g00066 zf-Dof 1.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3820g00066 - - gmx:102662809 380.948