Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi380g00008 ATGGACACAGCTCAGTGGGCACAGGTTAAACCTATGGAAGGTTCAAAGACTCCTATGTTGGAGAAAAGGGCAAGGCCTCAGAAAGATCAAGCTTTGAACTGTCCAAGGTGCAATTCAACAAATACTAAATTCTGTTACTACAATAACTATAGCCTCTCCCAGCCAAGGTACTTTTGCAAGACTTGTAGAAGGTATTGGACTGAAGGAGGCACTATGAGAAATGTTCCTGTGGGTGGAGGCTCAAGAAAGAACAAGAGACCAACACCATCTTCTACAACAACAACAACATCATCAACACCATCTCCAATATCATCAACAAAGAAGTTTCCTGATCTGGCAACACAACCATGTTTCCCTCAATCTGGTGCTTCTCAGAACCCAAAGATCCATCAAGGCCAAGATCTTAACATAACATATCCACCACCAATTGAGGACTACAATAGCATATCTAAGTTTATTGAGGTTCCTTACAACACTGATCAAGAGAAGGCCAACACTCATCATCATAACCACCTTCAAAATCCTAGTTCCTCATCACAATCTTCTCACCTGATTACTTCATCAAAGGGTTTAAATTCTTTCATGCCCATGTATAATTCAGCTGGGTTTCCTTTGCAAGACTTTAAGCCAGGCCTTAACTTCAGTTTAGAAGGGTTTGAAAATGGCTATGGTGGTTTTCATGGGATCCAAGATAATACTGGAGCAAGGATCTTGTTTCCCGTGGAGGATTTGAAGCAGCAACAGCTCCCAAGTAGTACTCATGAGTTTGGGTTGAATAGAAGTCAAGGTGATTCAACTGGGTATTGGAGTGGCATGCTAGGTGGAGGATCATGGTAG 837 0.4205 MDTAQWAQVKPMEGSKTPMLEKRARPQKDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGTMRNVPVGGGSRKNKRPTPSSTTTTTSSTPSPISSTKKFPDLATQPCFPQSGASQNPKIHQGQDLNITYPPPIEDYNSISKFIEVPYNTDQEKANTHHHNHLQNPSSSSQSSHLITSSKGLNSFMPMYNSAGFPLQDFKPGLNFSLEGFENGYGGFHGIQDNTGARILFPVEDLKQQQLPSSTHEFGLNRSQGDSTGYWSGMLGGGSW 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi380g00008 278 MobiDBLite consensus disorder prediction 163 185 - -
Gabi380g00008 278 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 21 179 IPR045174 GO:0003700|GO:0006355
Gabi380g00008 278 MobiDBLite consensus disorder prediction 84 133 - -
Gabi380g00008 278 ProSiteProfiles Zinc finger Dof-type profile. 32 86 IPR003851 GO:0003677|GO:0006355
Gabi380g00008 278 ProSitePatterns Zinc finger Dof-type signature. 34 70 IPR003851 GO:0003677|GO:0006355
Gabi380g00008 278 MobiDBLite consensus disorder prediction 170 185 - -
Gabi380g00008 278 MobiDBLite consensus disorder prediction 70 140 - -
Gabi380g00008 278 MobiDBLite consensus disorder prediction 1 29 - -
Gabi380g00008 278 Pfam Dof domain, zinc finger 29 86 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi380g00008 Gabi-Chr380 73673 75301 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi380g00008 1 278 C2C2-Dof Transcription Factor Family AT4G24060 40.510 3.92e-54 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gabi380g00008 zf-Dof 2.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi380g00008 - - lja:Lj0g3v0363619.1 363.999