Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3307g00052 ATGGTTTTCTCTTCTGTTCCAGTCTATGTAGATCCTCCCAACTGGCAGCAGCAACAAAATCATCATCATCATCAAGCAAATGGCAGTGAGAACACTCACATACTTCCACCTTTGCCTCCACAGGCAAATCATGTTGGAGGTGGTATTGGAGCAATCAGACCGGGCTCGATGGCAGATCGAGCCCGGCTAGCTAAGATACCACCTCCAGAGCCAGCTCTGAAGTGTCCTCGCTGTGATTCCACGAATACTAAGTTTTGTTACTTCAACAATTACAGTCTCACTCAACCCCGTCACTTCTGCAAGACTTGTAGACGCTATTGGACAAGAGGGGGTGCTCTTAGGAATGTTCCTGTGGGTGGAGGTTGTCGTAGAAACAAGAAGAACAAAAGGAGTCGCTCCAAATCTCCTTCAGCAAGTGAGAAACAAACACTTTCAAGTCCATCAAGTGCAATACCTACTTCAGGAGGAACAATCACTCATGAGCTAATAGGTCAATTGCCACAACCACAACCACCTAACCTACCTTTCATGGCCTCTCTACAGAATCTGAGTCGCTATGGAGTTGGAAACATGGGTTTAGGTTTGCGTGAGATTCAAGGACAGACCACGGATCATATGGGGTTTCATCAAATTGGTGGTGGTGGAGGAGTGGATCAGTGGCGGTTGCAGCAATTTCCTTTCTTGAATGGTTTTGATTCAACTTCAGCTGGTTCATACCCTTTTCAAAGTGAAGGTATTGAGGCACCTTTAGGCTTGGTTGGAGATATAGCTGCAAGTTCTAGGGTTACTACTCAGATTCCACCAGTTAAAATGGAAGAAAATGGAGCTATAAATTTATCAAGATCAACTCTGCAGAATGTCTCGGAAAATAACCAATACTATTCATGGACTGATATTTCAGGTCTTGCATCTTCTTCCACTAGTCATCTCTTGTAA 936 0.4444 MVFSSVPVYVDPPNWQQQQNHHHHQANGSENTHILPPLPPQANHVGGGIGAIRPGSMADRARLAKIPPPEPALKCPRCDSTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKNKRSRSKSPSASEKQTLSSPSSAIPTSGGTITHELIGQLPQPQPPNLPFMASLQNLSRYGVGNMGLGLREIQGQTTDHMGFHQIGGGGGVDQWRLQQFPFLNGFDSTSAGSYPFQSEGIEAPLGLVGDIAASSRVTTQIPPVKMEENGAINLSRSTLQNVSENNQYYSWTDISGLASSSTSHLL 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3307g00052 311 ProSiteProfiles Zinc finger Dof-type profile. 73 127 IPR003851 GO:0003677|GO:0006355
Gabi3307g00052 311 MobiDBLite consensus disorder prediction 117 157 - -
Gabi3307g00052 311 ProSitePatterns Zinc finger Dof-type signature. 75 111 IPR003851 GO:0003677|GO:0006355
Gabi3307g00052 311 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 39 169 IPR045174 GO:0003700|GO:0006355
Gabi3307g00052 311 MobiDBLite consensus disorder prediction 12 32 - -
Gabi3307g00052 311 MobiDBLite consensus disorder prediction 137 157 - -
Gabi3307g00052 311 Pfam Dof domain, zinc finger 72 127 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3307g00052 Gabi-Chr3307 438436 439976 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3307g00052 8 310 C2C2-Dof Transcription Factor Family AT3G55370 40.541 5.71e-59 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gabi3307g00052 zf-Dof 3.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3307g00052 - - gmx:100816635 454.136