Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3055g00013 ATGGAGGGGATAACTCCCAATTCATGCACAAGGCAAGTTTTAGAGAAGAAAGCAAGGCCACAAGAGCAACTGAATTGTCCAAGGTGCAATTCAACCAACACTAAGTTCTGTTATTACAACAACTATAGCCTCACACAACCCAGATACTTCTGCAAGACTTGTAGAAGGTATTGGACAGATGGTGGTTCTCTCAGAAATGTTCCAGTTGGTGGTGGTTCCAGAAAGAACAAGAGGGTCACCACAGGATCATCATCATCATCATCATCAGCTACACCTTCATCAAAAGTTCCAGACCTAAACCCACCAAGCCTTTCAATCTCAGCTATTTCTTCCCAAAACCCTAATAAAATGCATGGAGGCCAAGATCTTAATCTGGCTTTCCCATCTATGGAGAATTATCATCATCATCATCATCATCATCATGGCATGTCCTCATATGTTGAGATGCACAATGGTGAAAACTCTTCTTCAGCACCACCAACTTCTCTTTCAGCTCTTGAGCTACTTAGGTCTAGCATGGCATCTAGGGGTTTGAATAATCCTTATGCTCCTTCTTCCTTGATGCCAAACTCAAACTCTCTTTACCCATCTGGGTTTAATCCCATGCAAGAAGTTAAACCTAACCTTGGATTTTCAGTTGATCATGGGATTGGAAACAGATCCTATAATGATCATCAAGTTCAAGAGAATGGTAGCAGACTTTTGTTCCCTTTTGGAGATGTGAAGCAGGCTGAAGTGGATCAGAACAAAGAACAAGGAAATTCAACTGGATATTGGAATGGAATGATTGGTGAAGGGTCATGGTAA 807 0.4151 MEGITPNSCTRQVLEKKARPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTDGGSLRNVPVGGGSRKNKRVTTGSSSSSSSATPSSKVPDLNPPSLSISAISSQNPNKMHGGQDLNLAFPSMENYHHHHHHHHGMSSYVEMHNGENSSSAPPTSLSALELLRSSMASRGLNNPYAPSSLMPNSNSLYPSGFNPMQEVKPNLGFSVDHGIGNRSYNDHQVQENGSRLLFPFGDVKQAEVDQNKEQGNSTGYWNGMIGEGSW 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3055g00013 268 ProSiteProfiles Zinc finger Dof-type profile. 24 78 IPR003851 GO:0003677|GO:0006355
Gabi3055g00013 268 MobiDBLite consensus disorder prediction 65 161 - -
Gabi3055g00013 268 Pfam Dof domain, zinc finger 22 78 IPR003851 GO:0003677|GO:0006355
Gabi3055g00013 268 ProSitePatterns Zinc finger Dof-type signature. 26 62 IPR003851 GO:0003677|GO:0006355
Gabi3055g00013 268 MobiDBLite consensus disorder prediction 76 119 - -
Gabi3055g00013 268 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 171 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3055g00013 Gabi-Chr3055 178187 180157 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3055g00013 16 268 C2C2-Dof Transcription Factor Family AT3G61850 53.237 4.62e-76 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gabi3055g00013 zf-Dof 5.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3055g00013 - - gmx:778110 377.096