Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2955g00029 ATGGACACAGCTCAGTGGCCACAAGAGATCGTGGTGAAACCAATAGAAGATATAATAGTGACAAATACATGTCCAAAGCCTTCAGCTGAGAGGAAGCCAAGGCCACAGAAAGAACAAGCTATTAACTGTCCAAGGTGTCATTCAACAAACACAAAGTTCTGCTATTACAACAACTACAGCCTCACACAGCCTCGATATTTCTGCAAAACTTGTAGAAGGTATTGGACTGAAGGTGGATCCCTCAGAAACATCCCTGTAGGAGGTGGCACAAGGAAGAACAAGAGATCTTCTGCTTCTTGTTCATCACCTTCACCCAACATCAAGAAGCTTCCTGATCTTGTCACACCTCCAAGTTTGTCTCAAACTTGCACTCAAAACCCTAAGATTCATCAAGGCCAAGATCTAAACTTGGGTTTCCCAGCCACAACCAGGGATTTTAGAAATATCTCTGAATTGGTTCAACAAAATAACAACAACAATATGTCTGCTTCAGCTTCTTCTTCTTCTTCAACTACTACTACTACTGTTACTACTACAGCTTCAGCTTCTCACCTTTCAGCATTGGAGCTTCTTACTGGGATCACTACAAGTTCAAGGGGTTTGAATTGTTTCATGCCTGTGCCAGTTCAAGCTGATCCAAATAATGTTTACACTTGTGGATTTGCTCTGCAAGATTTTAAGCCAACTTTGAATTTTTCTTTAGATGGGATTGGAAGTGGGTACACAAGCCTCCAGGGTGTTCAAGAGACAAGTGGAAGGCTTTTGTTTCCTTTTGAGGACTTAAAACAGGTTTCTAACACCACTACTACAATGGATCAGAATAATAAGGAGCAACAAGGAGATTCAACAGGGTATTGGACTGGAATGTTAGGTGGAGGATCATGCTGCTCTTCTCTTCATGACCAAGGTGGAATCACGAAATGA 924 0.4177 MDTAQWPQEIVVKPIEDIIVTNTCPKPSAERKPRPQKEQAINCPRCHSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGTRKNKRSSASCSSPSPNIKKLPDLVTPPSLSQTCTQNPKIHQGQDLNLGFPATTRDFRNISELVQQNNNNNMSASASSSSSTTTTTVTTTASASHLSALELLTGITTSSRGLNCFMPVPVQADPNNVYTCGFALQDFKPTLNFSLDGIGSGYTSLQGVQETSGRLLFPFEDLKQVSNTTTTMDQNNKEQQGDSTGYWTGMLGGGSCCSSLHDQGGITK 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2955g00029 307 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 29 186 IPR045174 GO:0003700|GO:0006355
Gabi2955g00029 307 MobiDBLite consensus disorder prediction 90 108 - -
Gabi2955g00029 307 MobiDBLite consensus disorder prediction 84 126 - -
Gabi2955g00029 307 ProSitePatterns Zinc finger Dof-type signature. 43 79 IPR003851 GO:0003677|GO:0006355
Gabi2955g00029 307 Pfam Dof domain, zinc finger 39 95 IPR003851 GO:0003677|GO:0006355
Gabi2955g00029 307 ProSiteProfiles Zinc finger Dof-type profile. 41 95 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2955g00029 Gabi-Chr2955 384283 386320 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2955g00029 1 296 C2C2-Dof Transcription Factor Family AT4G24060 45.299 9.20e-71 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gabi2955g00029 zf-Dof 8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2955g00029 - - gmx:100782268 410.609