Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2344g00020 ATGGATCCTTCTAGTGGACAACATCAGCAAATGTCTAGCCAGTCATTGGAAAACATGTTAGCTTGTTCAAAAGCACAACAAGAGAGAAAGCCAAGACCTCAACCAGAACAAGCTCTGAAATGCCCAAGATGTGACTCCACCAACACCAAATTTTGTTACTACAACAACTACAGTCTTACCCAGCCAAGGTATTTCTGCAAGTCTTGCAGGAGATATTGGACCAAAGGAGGAACACTGAGGAATGTTCCTGTGGGTGGAGGGTGCAGGAAGAACAAGAGATCATCATCATCATCATCATCATCATCATCATCAGCATCAAAGAGGGCTCAAGATCAAACATTCACACCCAATCACAACCCACTCACTGGCCTCCCTCCATTGTCTTATGACTCCAGTGACCTTAACCTTGCATTAGCTAGGCTCCAAAAGCAATCATGTGGACAACTTGGTTTTGATGAACATGATCTTTCAATTTTGGGGAACCCCACAAGCACCCCATGTGATATTCTAAACAATCAAGGCATGAACCCTTCAACCACAAACCCAGGATTCTTAGATGCACTTAGAAGTGGGTTCCTTGGAACTCAGAATAATCTGCAGACTATGTACTATGGTTATGGGAATGGGGACATGGGTGAGGTTGACAATGGCAATGCTTCTGGGGTTGGGGTTAGTGGAGAGATGATGATGCCTTATGATCAAGAAATGAGTATTGCAACCACTCAAGCAGTGACAGTCACAACCATGAAACAAGAACTTTGTAATGGCAGGGAACAAAGTGAAAATAGGGTGTTATGGGGTTTCCCATGGCAGCTAAATGGAGACACAAACATGGGTGAACTTGACTCAGGAAGAGCTAGTTGGAATAATGGTATCACTTCATCTTGGCATGGGCTTCTCAATAGTCCTCTAATGTAG 918 0.4379 MDPSSGQHQQMSSQSLENMLACSKAQQERKPRPQPEQALKCPRCDSTNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSSSSSSSSSASKRAQDQTFTPNHNPLTGLPPLSYDSSDLNLALARLQKQSCGQLGFDEHDLSILGNPTSTPCDILNNQGMNPSTTNPGFLDALRSGFLGTQNNLQTMYYGYGNGDMGEVDNGNASGVGVSGEMMMPYDQEMSIATTQAVTVTTMKQELCNGREQSENRVLWGFPWQLNGDTNMGELDSGRASWNNGITSSWHGLLNSPLM 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2344g00020 305 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 196 IPR045174 GO:0003700|GO:0006355
Gabi2344g00020 305 ProSiteProfiles Zinc finger Dof-type profile. 39 93 IPR003851 GO:0003677|GO:0006355
Gabi2344g00020 305 MobiDBLite consensus disorder prediction 1 22 - -
Gabi2344g00020 305 ProSitePatterns Zinc finger Dof-type signature. 41 77 IPR003851 GO:0003677|GO:0006355
Gabi2344g00020 305 MobiDBLite consensus disorder prediction 90 126 - -
Gabi2344g00020 305 Pfam Dof domain, zinc finger 37 93 IPR003851 GO:0003677|GO:0006355
Gabi2344g00020 305 MobiDBLite consensus disorder prediction 83 126 - -
Gabi2344g00020 305 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2344g00020 Gabi-Chr2344 258581 260441 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2344g00020 1 305 C2C2-Dof Transcription Factor Family AT2G28510 40.476 4.35e-55 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gabi2344g00020 zf-Dof 1.2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2344g00020 - - gmx:100799737 489.96