Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2019g00010 ATGGGTGTGGGCAAGGTGTGTGTTTGGTTAGTTATAATCGTGATAGCCGGTGTGGGGTTAACAGAGGCTCAACCAGAGGCACATTTCAAGTGTGCGACGGAGAACGCCACGTGTCGTGCACTCATCGACTACACGAACCCAAACGGCACTACTCTGCGCCGCGTCCAAACCCTCTTCAGCGTGAAGCACCTCCCCGACATCCTCGGCGCAAACAACCTCCCCAGCAACACCAACGGTAGCCACAAGGTGGGGCCCAACGAGGTTGTGAAGGTGCCGTTCCCGTGCAAGTGCAGTGACGGAACCGGTCTGTCGAACCAGGTTCCGGTTTACAAAATCAGACCGGGCGACACACTGTTCGACATAGCGACAACGGTGTTCGCGGGTTTGTTGAAGTACCAGCAGATCCAAACGGCGAATATAAAAAAGATACCTGACGCAAATAACATAACTGCTGGGGATAAGATTTGGATTCCCCTCCCTTGTAGCTGCGATCAGGTAGGTGGCAGCAGTGTGGTGCACTATGCACATGTGGTGGAGTCAGGGAACACCATGGGTGGTATTGCTCAACAATATGGTACCACTGAACAGATTCTCCTCACCATTAATGGGATTACTGATCCCAAATCCCTTCAGGCCGGTCAAATTCTTGATGTTCCCCTTCAAGCTTGTTCCTCGAATGTGAGAAATGACTCATTGGACTCCCCTTTGCTTGTTGCCAATGGTACTTACGTTTACACTGCTAATGAATGCGTGAAATGCAAGTGCGACTCCAGTAACAAATTTATATTACAATGTGAGCCATCCCAATTGAAACCGATAAATTGGCGTGTTTGCCCCTCCATGGAATGCTCAACGAATGTCTCCATTGGCAATACTACATCTGTGAATTCCTGCAATAGCACAACATGTGCCTACGCTGGTTATACCTCCCTTAATATCTCTACCATTCTTGCAACTCAGGACACTTGTGCTGTACCACCTGGTGCTTCAGGAGGATCAAATGCTGGTTCAGGAGCATCAAAGAGCACCTTGCCAGGCTTGGTTTGGAGTAATCTTTTCATTCTCATTCACTTCGTCCTCTTTTTTGTCTATCTTTTGTGA 1101 0.4886 MGVGKVCVWLVIIVIAGVGLTEAQPEAHFKCATENATCRALIDYTNPNGTTLRRVQTLFSVKHLPDILGANNLPSNTNGSHKVGPNEVVKVPFPCKCSDGTGLSNQVPVYKIRPGDTLFDIATTVFAGLLKYQQIQTANIKKIPDANNITAGDKIWIPLPCSCDQVGGSSVVHYAHVVESGNTMGGIAQQYGTTEQILLTINGITDPKSLQAGQILDVPLQACSSNVRNDSLDSPLLVANGTYVYTANECVKCKCDSSNKFILQCEPSQLKPINWRVCPSMECSTNVSIGNTTSVNSCNSTTCAYAGYTSLNISTILATQDTCAVPPGASGGSNAGSGASKSTLPGLVWSNLFILIHFVLFFVYLL 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2019g00010 366 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 8 324 - -
Gabi2019g00010 366 CDD LysM 176 218 IPR018392 -
Gabi2019g00010 366 SUPERFAMILY LysM domain 174 219 IPR036779 -
Gabi2019g00010 366 ProSiteProfiles LysM domain profile. 174 218 IPR018392 -
Gabi2019g00010 366 ProSiteProfiles LysM domain profile. 108 157 IPR018392 -
Gabi2019g00010 366 SMART LysM_2 175 219 IPR018392 -
Gabi2019g00010 366 SMART LysM_2 109 158 IPR018392 -
Gabi2019g00010 366 CDD LysM 109 157 IPR018392 -
Gabi2019g00010 366 Gene3D LysM domain 164 233 IPR036779 -
Gabi2019g00010 366 Pfam LysM domain 176 219 IPR018392 -
Gabi2019g00010 366 Pfam LysM domain 110 158 IPR018392 -
Gabi2019g00010 366 Gene3D LysM domain 106 163 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2019g00010 Gabi-Chr2019 84965 87022 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2019g00010 23 342 LysM Receptor-like Protein (LYPs) Gene Family AT2G17120 46.584 9.55e-95 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2019g00010 - - lang:109351135 482.256