Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi189g00001 ATGATGCCACCAAATGACACACTTCCAAAGCCTGCAACAACAAAAGATAATGAGAACCAAAGTTCCGATGGCCGGAAAACCACCTCCACAAGGCCACCGGAGCATGGCCTAAAGTGTCCACGATGTGACTCTTCTAACACAAAGTTCTGCTACTACAACAACTACAGTCTGAGCCAGCCAAGGCATTTTTGCAAGACATGTAGAAGATACTGGACAAATGGTGGAGCCTTGCGTAACGTTCCAATAGGTGGTGGTTGCAGGAAGAACAAGAAAGCCAAGTCTTCATCATCATCATCATCATCGAGGCTCTCATTTGACTCCAAAGACTCTGGTTCTTCTTCAGAGCTCGGTGGCCTCAGGTTCCTTAATGGTATTTCACCATCTATGGATTTTCGGCTTGGTGGGTTACCCTTCCCTTCTATGCAGAATCATCACCCACAAACCACTGGTATCTATAACCAGTTCTCTTCTTTTGGTGATGTTCCAGCCTCTTCTGCTTCTGCCACAAGTGCTTCTGGTTTCAACCTTGATCCCTCTGGTGGCTCAAATTTCTTGCTTGGTCTGAACCACCCTTTTTCATCTTCAATGGGAAATGGATTCACTGGTGCAGTTCAGGGCATGAACTCAATGAACGTTCATGGTAACCTTGCTTCTTCAATTGAATCATTGAGCTCTATTAATCAGGACTTGCACTGGAAGCTGCAGCAGCAGAGATTAGCAATGATGCTTGGTGGAGAAAACGACCAGAGAGATCATAGCAGCGTTTCACTTTCACAGGTTAACCTTGAGAACCAGACCCAGAAGCCACAACCCATTTTGTTTCAGAACCTTGAGATTTCAAAGCCAGAGAGTTTCCCAGTTGGGAATTCAAGAAAAGAAGGCCCAAATGGAGATACACCCACTGAATGGTTCTTTGGGAATCCTTTTTCTTCAGTGACTCCTTCAACAACAACTACCATTAATGGAGGCAATGGTAATGAAAATACAAACAACAACTGGAGTGGGGTCCACGCTTGGGGTGATGTTCAGCAACCATATAGCACTTTGCCCTAG 1053 0.452 MMPPNDTLPKPATTKDNENQSSDGRKTTSTRPPEHGLKCPRCDSSNTKFCYYNNYSLSQPRHFCKTCRRYWTNGGALRNVPIGGGCRKNKKAKSSSSSSSSRLSFDSKDSGSSSELGGLRFLNGISPSMDFRLGGLPFPSMQNHHPQTTGIYNQFSSFGDVPASSASATSASGFNLDPSGGSNFLLGLNHPFSSSMGNGFTGAVQGMNSMNVHGNLASSIESLSSINQDLHWKLQQQRLAMMLGGENDQRDHSSVSLSQVNLENQTQKPQPILFQNLEISKPESFPVGNSRKEGPNGDTPTEWFFGNPFSSVTPSTTTTINGGNGNENTNNNWSGVHAWGDVQQPYSTLP 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi189g00001 350 ProSitePatterns Zinc finger Dof-type signature. 39 75 IPR003851 GO:0003677|GO:0006355
Gabi189g00001 350 MobiDBLite consensus disorder prediction 10 27 - -
Gabi189g00001 350 MobiDBLite consensus disorder prediction 82 116 - -
Gabi189g00001 350 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 22 240 IPR045174 GO:0003700|GO:0006355
Gabi189g00001 350 MobiDBLite consensus disorder prediction 1 38 - -
Gabi189g00001 350 Pfam Dof domain, zinc finger 37 91 IPR003851 GO:0003677|GO:0006355
Gabi189g00001 350 MobiDBLite consensus disorder prediction 90 116 - -
Gabi189g00001 350 MobiDBLite consensus disorder prediction 318 338 - -
Gabi189g00001 350 ProSiteProfiles Zinc finger Dof-type profile. 37 91 IPR003851 GO:0003677|GO:0006355
Gabi189g00001 350 MobiDBLite consensus disorder prediction 318 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi189g00001 Gabi-Chr189 61053 62392 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi189g00001 9 350 C2C2-Dof Transcription Factor Family AT5G65590 39.143 1.88e-59 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gabi189g00001 zf-Dof 5.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi189g00001 - - gmx:100777894 399.438