Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1841g00018 ATGGTTTTCTCTTCTATTCCACTCTATTTAGATCCTCCCAATTGGCACCAACATCCAAATCAACATCAAGCAAATGGCAGTGAAAGTACTCATCTGCTTCCACCGCTACTTTCACAACCACAACCACAGTCATCTCACGGTGCAAACCGGGGTCAGCCGGCAAAGATACCGGTACCGGCACCGGAAACAGCTCTGAAGTGTCCTCGGTGTGAATCCACCAACACTAAATTTTGCTACTACAACAATTATAGCCTCTCTCAACCTCGTCACTTCTGCAAGACATGTAGGCGTTATTGGACAAGAGGGGGTGCTCTAAGGAACGTTCCAGTTGGTGGAGGATGCCGTAGGAACAAGAAGAGCAAAAGGAGTAACTCTAAATCTCCAGCATCTAATGAAAAACATTCACTTCCCAATTCCACAAGTGCAATCCCTTCAGGTGAGGTAATTGGTCGTTTCCCACAACCAAGTAATAGATCTTTCATGTCCTCGTCTATTCAGAATCTGAACCACTATGGTGGTGTTCAAAACATGAGCCTTGGCATGCGTGAGATCCAAGCACAGAACAATCATCATATGGGGTTTGGTCTTAGTTCAACTGGAGGAGGAGAAGTGGATCAGTGGCGCTTTCAGCAATTTCCTTTCTTCAATAATTTTGAGCCAACTTCAGCTGTTTCGTTCCCATTATTTCAAAGTGAAAGTACTGTTGATCAAGCAACCGCTGGTAATTTGGTTGGAGATGTTGCCACGACTTCTAGGGTTACTAATTTACCACAGCTTAAATTTGAATACAACGGTGGTCAAAAACCATCTCTGAATATCCCAGAAAATAACCATTACTATTCATGGACTGATTTATCTGGTCTTGCCTCTTCTTCCACTAGTCATCTCTTGTAA 894 0.4351 MVFSSIPLYLDPPNWHQHPNQHQANGSESTHLLPPLLSQPQPQSSHGANRGQPAKIPVPAPETALKCPRCESTNTKFCYYNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKSKRSNSKSPASNEKHSLPNSTSAIPSGEVIGRFPQPSNRSFMSSSIQNLNHYGGVQNMSLGMREIQAQNNHHMGFGLSSTGGGEVDQWRFQQFPFFNNFEPTSAVSFPLFQSESTVDQATAGNLVGDVATTSRVTNLPQLKFEYNGGQKPSLNIPENNHYYSWTDLSGLASSSTSHLL 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1841g00018 297 ProSitePatterns Zinc finger Dof-type signature. 67 103 IPR003851 GO:0003677|GO:0006355
Gabi1841g00018 297 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 44 214 IPR045174 GO:0003700|GO:0006355
Gabi1841g00018 297 MobiDBLite consensus disorder prediction 109 156 - -
Gabi1841g00018 297 ProSiteProfiles Zinc finger Dof-type profile. 65 119 IPR003851 GO:0003677|GO:0006355
Gabi1841g00018 297 MobiDBLite consensus disorder prediction 16 50 - -
Gabi1841g00018 297 MobiDBLite consensus disorder prediction 14 60 - -
Gabi1841g00018 297 Pfam Dof domain, zinc finger 64 119 IPR003851 GO:0003677|GO:0006355
Gabi1841g00018 297 MobiDBLite consensus disorder prediction 129 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1841g00018 Gabi-Chr1841 258048 259563 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1841g00018 1 121 C2C2-Dof Transcription Factor Family AT2G37590 53.103 7.35e-42 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gabi1841g00018 zf-Dof 6.9e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1841g00018 - - gmx:100787775 315.464