Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00413 ATGATTCAAGAGCTGTTAGGAGGAGGTGCAGGAGTACTACTAGGAGGAGAAAGGAAAATCTCCATTAATGGTGGAGTTTTAGAAGGTTCACCTTCTTCTTCACCTTCTCAATCTCCTTCTTCTTCTACAACAACACCCACTACCACTACTACTTCAACAACAACATCATCTTCTGATCAACAAAATCTGAGGTGTCCAAGATGCGATTCTTCCAACACTAAGTTCTGTTACTACAACAACTACAACCTCACTCAGCCTCGACACTTCTGTAAGACCTGCCGACGATACTGGACTAAAGGCGGTGCCTTACGCAACGTTCCAATCGGAGGCGGCTGCCGGAAAAATAAGAGCAGTAGTACGTCCACCCCTGCTGGAAAATTGAACGCCGGAAAAATCAAAACACCTTCAGACATCGTTAAGTCGAACCTCGGAAGTGGGTTCGATCATGAACCACCCTCCAACCCAATTTTATGGGCTTCACCACAGAATTCTCAGCTGTTGGCCTTATTGAGAGCAACCCAGAACCATAACCCTAACCCTAACCCTAATTCTGTTATCATCAAGGAAGAGGGAGGTATGATTGGATCCCATATGAGTTTAGAGTCAGGAGTAGCCACAGGTGCATTAAATTCACGATCCATGAGCTTAGATCCTCTTAGTCAGGTTCCTATTGGTCTGTGCAGTTCTTTCTGGAGAAACAATCAACATCAATCTCAACAGCATCTCCATCAACAACAACAACAACAACAACAACAACAACATAGCATGTTACTGGGTGAAGGTCAGAACACTGGAATTCAAGAACTTTATCAGAGGCTTAGATTATCTGCTAACTACTACACCGATCAGTCACCAGTAGTAATGAACAATGTCACTTCCACATCTTCCTCACCTTCTTCCATCTTGGAACCCTCTCCCATTTCAGCAGGGGAATTGGGTTACTGGAATCCGGCGTATTCATGGCCCAATCTACCAACCACTAATGGTGCATTTCCCTAA 999 0.4444 MIQELLGGGAGVLLGGERKISINGGVLEGSPSSSPSQSPSSSTTTPTTTTTSTTTSSSDQQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKSSSTSTPAGKLNAGKIKTPSDIVKSNLGSGFDHEPPSNPILWASPQNSQLLALLRATQNHNPNPNPNSVIIKEEGGMIGSHMSLESGVATGALNSRSMSLDPLSQVPIGLCSSFWRNNQHQSQQHLHQQQQQQQQQQHSMLLGEGQNTGIQELYQRLRLSANYYTDQSPVVMNNVTSTSSSPSSILEPSPISAGELGYWNPAYSWPNLPTTNGAFP* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00413 332 ProSitePatterns Zinc finger Dof-type signature. 65 101 IPR003851 GO:0003677|GO:0006355
Eupl13g00413 332 MobiDBLite consensus disorder prediction 26 65 - -
Eupl13g00413 332 ProSiteProfiles Zinc finger Dof-type profile. 63 117 IPR003851 GO:0003677|GO:0006355
Eupl13g00413 332 MobiDBLite consensus disorder prediction 113 132 - -
Eupl13g00413 332 MobiDBLite consensus disorder prediction 113 127 - -
Eupl13g00413 332 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 48 256 IPR045174 GO:0003700|GO:0006355
Eupl13g00413 332 MobiDBLite consensus disorder prediction 24 65 - -
Eupl13g00413 332 Pfam Dof domain, zinc finger 61 117 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00413 Eupl-Chr13 5693674 5694929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00413 31 118 C2C2-Dof Transcription Factor Family AT5G65590 64.045 7.41e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Eupl13g00413 zf-Dof 1.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00413 - - nnu:104595870 435.261