Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g00880 ATGGGTTTGAGTTCGAAACAAGTCTCCGGAAACGGACTCGATTGGGCGCATCACTTGTTGCAGGCCGATGCTTTGGACCTTCCCAAGCCTCCTCAGCAGCAGCAGCAGCAGCAACAGCAGCAGGGGCCACCGTTGAAGTGTCCGAGGTGTGAATCCACCAACACTAAGTTTTGTTACTTCAACAATTACAACAGGTCGCAGCCTCGCCATTTCTGCAAGTCATGTAGGAGGCACTGGACCAAAGGAGGTACCCTTCGCAATGTTCCCGTTGGCGGCGGACGCAAGAACAAGCGCCTCAAAACCACCACCACCAACAACAACCATGAAAGCAGAGGCGCCAACGTTGCAAATCAACAGCAGCAGCAGCGGCATCTGCCTCTTGCGTTTAGAGATCAGAAGAACATATCTGAAATTCTGTACCAGGCACTCCTGCAGCCACCATCGTCGCAGCCGGATTATATTAACAGCAACAACGAGGGAGAGAAGATGAACAGCTTCTTAGGTTCATCGCTATCTCTACCTCCTCTCCCCAACTTTCCCTTTATTACAAGCTCTTTTGAAAACAACCCTTCTTCGATCTCCTCCTCCTTCACCGGTACTGCCCAGTTTCAATCATCAAATTTGTATAATTATACCGGAGAAAGTGAAACTGCAGAGGACCCGACCAGCACCAGTACAAGTACCAGCAACACCTCCGCGATCAACCCGTCATGGCAATTACCTAATACAGGAAGTTTCATCGATTCGTCGAGCAACTGGAGCTGGGATGATCTTAACACACTCATCTCTACCGATCTCAACCAATCCTGGGATGATTCCCAGAACAAACAACAGGGGATTTAG 843 0.497 MGLSSKQVSGNGLDWAHHLLQADALDLPKPPQQQQQQQQQQGPPLKCPRCESTNTKFCYFNNYNRSQPRHFCKSCRRHWTKGGTLRNVPVGGGRKNKRLKTTTTNNNHESRGANVANQQQQQRHLPLAFRDQKNISEILYQALLQPPSSQPDYINSNNEGEKMNSFLGSSLSLPPLPNFPFITSSFENNPSSISSSFTGTAQFQSSNLYNYTGESETAEDPTSTSTSTSNTSAINPSWQLPNTGSFIDSSSNWSWDDLNTLISTDLNQSWDDSQNKQQGI* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g00880 280 MobiDBLite consensus disorder prediction 86 120 - -
Eupl06g00880 280 ProSitePatterns Zinc finger Dof-type signature. 47 83 IPR003851 GO:0003677|GO:0006355
Eupl06g00880 280 Pfam Dof domain, zinc finger 45 97 IPR003851 GO:0003677|GO:0006355
Eupl06g00880 280 MobiDBLite consensus disorder prediction 213 241 - -
Eupl06g00880 280 MobiDBLite consensus disorder prediction 97 120 - -
Eupl06g00880 280 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 32 228 IPR045174 GO:0003700|GO:0006355
Eupl06g00880 280 ProSiteProfiles Zinc finger Dof-type profile. 45 99 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g00880 Eupl-Chr6 14300666 14302043 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g00880 22 129 C2C2-Dof Transcription Factor Family AT5G60200 48.739 3.71e-30 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Eupl06g00880 zf-Dof 4.3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g00880 - - nnu:104586454 247.669