Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g01093 ATGTCGGAAACAAAAGACCCAGAGATTAAATTGTTCGGGAAAACGATTCGAATGCCTGCGAACGAGGAGACTTCGGCCTTTTCCGGCGATGGAGGCGGAGCTTCTACTCATGAAGAGAATTTGTATCACGATTACGTTTCTCCTTCAACGAATTCGCAGGAGAAGAAATCAAAGGAGGAAGAGGACGAACAAGCCGAAGAGAAGGGTCCATTGGGCAGTGGATCGACTGAAACTAAAGAGAAAGACAGGGCAGCGCCTCAGATTTTGGAAGAATTAACAGATCCTTCTATGTCCTCGGGGATTAATGAGAATCCTAAAACACCCTCTGTTGACAAAGAAACTGCAACAACTAAAGGTTCCAAGACAGAAGAAGAACAGAGTGAGATGACTATGTCACAAGAGAAAACACTGAAGAAACCAGACAAGATACTTCCATGTCCCCGTTGTAATAGCATGGACACCAAGTTCTGTTACTATAATAATTACAATGTCAGCCAACCAAGACATTTCTGCAAGAACTGCCAGAGATACTGGACAGCTGGTGGAACCATGAGGAACGTGCCTGTGGGAGCTGGCCGTCGCAAGAACAAGAACGCTGCTTCACATTACCGACACATCACCATCCCTGAAGCCCTCCAAACAGCTCGAAATGATGTCCCAGATGGAATTCACCACCCTGCAATGAAAGCAAATGGTACCATCCTCTCCTTTGGCTCAGATGCACCTCTCGGTGAATCCATGGCTTCAGTGTTGAATCTCACTGAGAAAACAATGCGGAACGGCACTCGGAATGGGTTTCATAGACCAGAAGAACACCGAATTCCAGGTTATCGTGGTGCAGGAGAAAATGGGGCTGATAATTCGAGTGAATCTTCTGTTATAGCTTCGAATTCTACAGAGGAAGGAAACAGGTTGGGTTTGCAGGAGCCAATGATGCAGAGTTGTTGTGGGTTCCCTCCACAGATACCATGCTTCCCTGGGGCTCCTTTTCCTTATCCATGGAACTCAACTCAGTGGACCTCTGCAGTACCCCCACCTGCTTTCTGTCCTTCAAGCTTTCCTATATCATTCTACCCCGCAACAACTTATTGGGGTTGTACTGTCCCAGGCACTTGGAGCATCCCTTGGCCGTCCCCACCATCTTCTTCTCCAATTCCTGGAACGCCAGGCTCTGGTCCTAATTCTCCAACCTTGGGGAAGCATTCAAGAGAGGGGGACATGCTTAAACCAAACATTTCAGAGAAAGAAGATCCACCAAAACAGAGTAATTCAGAGAGATGTATTTGGATTCCAAAGACTTTGAGGATCGATGACCCTGGCGAAGCTGCAAGGAGCTCCATATGGGCTACACTGGGCATTAAGAACGACAAGGCTGATTCTGTCAGTGGAGGAGGGCTCTTCAAGGCCTTCCAATCAAAGGGTGATGAAAAGAATCACATGCCCAAAACCTCTCAGGTGTTGCAAGCCAACCCTGCAGCCTTGTCTCGGTCAGTCAACTTCCATGAGAATTCATAA 1515 0.4733 MSETKDPEIKLFGKTIRMPANEETSAFSGDGGGASTHEENLYHDYVSPSTNSQEKKSKEEEDEQAEEKGPLGSGSTETKEKDRAAPQILEELTDPSMSSGINENPKTPSVDKETATTKGSKTEEEQSEMTMSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVSQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNAASHYRHITIPEALQTARNDVPDGIHHPAMKANGTILSFGSDAPLGESMASVLNLTEKTMRNGTRNGFHRPEEHRIPGYRGAGENGADNSSESSVIASNSTEEGNRLGLQEPMMQSCCGFPPQIPCFPGAPFPYPWNSTQWTSAVPPPAFCPSSFPISFYPATTYWGCTVPGTWSIPWPSPPSSSPIPGTPGSGPNSPTLGKHSREGDMLKPNISEKEDPPKQSNSERCIWIPKTLRIDDPGEAARSSIWATLGIKNDKADSVSGGGLFKAFQSKGDEKNHMPKTSQVLQANPAALSRSVNFHENS* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g01093 504 MobiDBLite consensus disorder prediction 116 136 - -
Eupl04g01093 504 MobiDBLite consensus disorder prediction 92 115 - -
Eupl04g01093 504 MobiDBLite consensus disorder prediction 261 277 - -
Eupl04g01093 504 PANTHER CYCLIC DOF FACTOR 2 1 504 IPR045174 GO:0003700|GO:0006355
Eupl04g01093 504 MobiDBLite consensus disorder prediction 402 422 - -
Eupl04g01093 504 ProSiteProfiles Zinc finger Dof-type profile. 144 198 IPR003851 GO:0003677|GO:0006355
Eupl04g01093 504 MobiDBLite consensus disorder prediction 377 391 - -
Eupl04g01093 504 MobiDBLite consensus disorder prediction 377 425 - -
Eupl04g01093 504 MobiDBLite consensus disorder prediction 260 301 - -
Eupl04g01093 504 MobiDBLite consensus disorder prediction 53 88 - -
Eupl04g01093 504 Pfam Dof domain, zinc finger 141 198 IPR003851 GO:0003677|GO:0006355
Eupl04g01093 504 ProSitePatterns Zinc finger Dof-type signature. 146 182 IPR003851 GO:0003677|GO:0006355
Eupl04g01093 504 MobiDBLite consensus disorder prediction 284 301 - -
Eupl04g01093 504 MobiDBLite consensus disorder prediction 1 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g01093 Eupl-Chr4 16740197 16744037 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g01093 6 504 C2C2-Dof Transcription Factor Family AT5G39660 44.038 1.06e-108 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Eupl04g01093 zf-Dof 1.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g01093 - - ming:122065893 686.411