Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g02382 ATGAGACCCGCTACGCTGCGCCTCACCCTCTCCTTCCTCTCCGTCCTCACGTTTACAGCAACAGTTCAGGGTTTCAATTGCAGCTCTACTTCCCAGTGTCAAGCTCTGGTCGACTACGTGTCTCCCAATGCTACAACCCTCTCCAACATCAAAACCCTCTTCGGAGTTACTCACCTCCACTCCATACTGGGAGCAAACTCGATGCCACTCGATACCCCACCGAATACAATTGTTGCAGCGAAGGAGACAATCAAAATCCCCTTTCCGTGCATCTGCAACAACGGAAGCGGAATCTCGAACAAGCGTCCGATCTACACCGTACAATCAGGCGACGGTCTAGATCATATCGCGCGGGATGTCTTCTCAGAGCTAATGACGTACATGCAGATCGCGGCCGTCAATAACATCTCCAACCCGAACTTGATCGAAATAGGAGACGAGCTGTGGATCCCGCTTCCTTGCAGCTGCGACAAAGTGGAGGGAGCGGAAGTCGTTCATTATGGACACGTGGTGGCTGCTGGGAGCACGGTAGCGCAGATCGCCACGGAGTATGGGACCACGGAACAGATATTGTTGACGCTAAATGGAATAGTAGATGCGAAGGACCTTGTCGCCGGCGCCGTTCTGGACGTTCCTCTCAGAGCTTGCTCGTCAGCAGTAAACAACACGTCGTTGGATTACCCCTTACTTGTCCCAAATGGCACTTACACCTTTACAGCCCACAATTGCGTCCAGTGCAAGTGTGACTCTGCGAAGAACTGGACATTACAATGTGAGCCATCCCCGATGGAGGTCAAAGTGGCGTCCCCTTGGAGCCAATGCCCTTCTACGCAGTGTGAAGGTACAGGCAATTTATTCATCGGCAATGCGTCCTTGACCTCTGGTTGTGTAAGCACCACTTGTGCCTACGCTGGATACACCAATCAAACCATCCTCACAACCCTCGCCAGTGAATCCAATTGCACTGTTGGGGCACCTGTACAGCCTTCAGGTAATTATGCACCAAAGATCGGTTTGCAAGGGTCGATTTGGAGGTGGCTTCTTATCTCTCTTCACTTGGGCTTACTTTGTTTTGGCCTTCTCTGTTAG 1089 0.5179 MRPATLRLTLSFLSVLTFTATVQGFNCSSTSQCQALVDYVSPNATTLSNIKTLFGVTHLHSILGANSMPLDTPPNTIVAAKETIKIPFPCICNNGSGISNKRPIYTVQSGDGLDHIARDVFSELMTYMQIAAVNNISNPNLIEIGDELWIPLPCSCDKVEGAEVVHYGHVVAAGSTVAQIATEYGTTEQILLTLNGIVDAKDLVAGAVLDVPLRACSSAVNNTSLDYPLLVPNGTYTFTAHNCVQCKCDSAKNWTLQCEPSPMEVKVASPWSQCPSTQCEGTGNLFIGNASLTSGCVSTTCAYAGYTNQTILTTLASESNCTVGAPVQPSGNYAPKIGLQGSIWRWLLISLHLGLLCFGLLC* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g02382 362 Pfam LysM domain 105 151 IPR018392 -
Eupl03g02382 362 Pfam LysM domain 169 212 IPR018392 -
Eupl03g02382 362 ProSiteProfiles LysM domain profile. 103 150 IPR018392 -
Eupl03g02382 362 SMART LysM_2 104 151 IPR018392 -
Eupl03g02382 362 SMART LysM_2 168 212 IPR018392 -
Eupl03g02382 362 ProSiteProfiles LysM domain profile. 167 211 IPR018392 -
Eupl03g02382 362 SUPERFAMILY LysM domain 168 212 IPR036779 -
Eupl03g02382 362 Gene3D LysM domain 99 157 IPR036779 -
Eupl03g02382 362 CDD LysM 104 150 IPR018392 -
Eupl03g02382 362 SUPERFAMILY LysM domain 104 152 IPR036779 -
Eupl03g02382 362 CDD LysM 169 211 IPR018392 -
Eupl03g02382 362 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 5 322 - -
Eupl03g02382 362 Gene3D LysM domain 158 224 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g02382 Eupl-Chr3 55213508 55217219 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g02382 6 314 LysM Receptor-like Protein (LYPs) Gene Family AT2G17120 50.479 3.09e-99 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g02382 - - jcu:105630073 414.075