Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g00379 ATGGCGAAACACTCTTACAGCAACTGCAACCGCTGCTTCTTCTTCTTCATCACCACCTCATTGTTCATATTTTCACATTATGTAGTCGTTATGGTTAACTCCAAATCAACAATCGAGCCGTGCTCCAACTCCGACTCCTGCAATGCCATGGTAGGCTACATTCTCTACACCGACCTCAAAGTCTCAGAAGTTTCAGCTCTCTTCCAAATTGACCCCATTGCTCTCCTCACCGCCAATGCCATTGACATCTCCTACCCAGACGTCGAAAACCACATCCTCCCTTCCCATCTCTTCCTCAAAATTCCCATCACTTGCTCTTGCGTCGACGGTATCCGCAAGTCCGTCGCCACCCGATACAAGACCCGCCCTTCCGACACTCTTGACTCCATTGCTGACTCCATCTACTCCGGTCTTGTCTCCGCTGATCAGCTCAGAGAGGCCAATTCGATCTCCGATCCGTCGGTTCTTGATGTGGGCCAAACCCTTGTTGTTCCTCTGCCCTGCACTTGCTTCAACTCTAGCGATAACTTCCTCCCTGCGGTCTATCTTTCCTACGTCGTGAAGCCGATGGATACGTTGGCAGGGATTGCGGCGAGGTATTCGACTACCATTACGGATCTTATGAATGTGAATGCTATGGGGAGTACCTCTATTAAAGCCGGGGATATACTTGCAATTCCGCTGCCTGCTTGTGCTTCTAATTTTCCGAGATATTCCTCGGATTTCGGCTTGAATGTGGCAAATGGGAGCTACGCTATTACCGCGAGTCATTGCGTGCAATGTAGTTGTGGACCGGGGAATCTTGCTCTGTACTGCACACCTGCTTCATTGGCAGTTTCGTGTTCGAGCATGCAATGCAGAAACAGTAATCTCATGCTTGGGAATGTTACAGTGCAACCCAGTAGTGCTGGTTGCAACATTACTTCTTGTACTTATGGTGGCTTTGTCAATGGCACCATTCTCACTACGTTGTCCACATTTCTTCAACCTCGATGCCCAGGGGAACATCAATTTCCTCCACTTGTAGCCCCCCCTTCATTAACTATCAGGGATTCAGTGTTTGCTCCATCCCCTGCACCTTATCAATCAGATGGTCTGGCACCAAAAACACCCAAGTCTTCGGTGATGCCTGGAACTGGGTTGCTTCCTGGCTTTCCTCCAGCAAATGGTCCTAGTGGAAGTACTAGTGGAAGTACTTCTGATGCTCCTTTCTTAATGAATCCACTATCCAGGTTTCCAAGTGCACTAGTTTTATGTATATTTATTAAGTTGATGGCGTTGATGGCTTTGTAA 1293 0.4818 MAKHSYSNCNRCFFFFITTSLFIFSHYVVVMVNSKSTIEPCSNSDSCNAMVGYILYTDLKVSEVSALFQIDPIALLTANAIDISYPDVENHILPSHLFLKIPITCSCVDGIRKSVATRYKTRPSDTLDSIADSIYSGLVSADQLREANSISDPSVLDVGQTLVVPLPCTCFNSSDNFLPAVYLSYVVKPMDTLAGIAARYSTTITDLMNVNAMGSTSIKAGDILAIPLPACASNFPRYSSDFGLNVANGSYAITASHCVQCSCGPGNLALYCTPASLAVSCSSMQCRNSNLMLGNVTVQPSSAGCNITSCTYGGFVNGTILTTLSTFLQPRCPGEHQFPPLVAPPSLTIRDSVFAPSPAPYQSDGLAPKTPKSSVMPGTGLLPGFPPANGPSGSTSGSTSDAPFLMNPLSRFPSALVLCIFIKLMALMAL* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g00379 430 Gene3D LysM domain 113 175 IPR036779 -
Eupl03g00379 430 ProSiteProfiles LysM domain profile. 117 164 IPR018392 -
Eupl03g00379 430 ProSiteProfiles LysM domain profile. 183 226 IPR018392 -
Eupl03g00379 430 CDD LysM 184 226 IPR018392 -
Eupl03g00379 430 MobiDBLite consensus disorder prediction 360 400 - -
Eupl03g00379 430 SUPERFAMILY LysM domain 183 228 IPR036779 -
Eupl03g00379 430 Gene3D LysM domain 178 234 IPR036779 -
Eupl03g00379 430 SMART LysM_2 184 227 IPR018392 -
Eupl03g00379 430 SMART LysM_2 118 165 IPR018392 -
Eupl03g00379 430 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 29 336 - -
Eupl03g00379 430 Pfam LysM domain 119 165 IPR018392 -
Eupl03g00379 430 Pfam LysM domain 185 227 IPR018392 -
Eupl03g00379 430 SUPERFAMILY LysM domain 117 166 IPR036779 -
Eupl03g00379 430 CDD LysM 117 164 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g00379 Eupl-Chr3 16204053 16214613 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g00379 13 400 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 67.866 0.0 541
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g00379 - - ming:122075198 636.336