Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g00071 ATGTCTGAGATCAAAGATCCGGCTATTAAACTCTTTGGGAAGACGATATCGTTCCCGGAAAGTCAGATACCGGCGGAGTCTGAAGAGAAATCCGATCTGGACTGTCAGATTACGGAAGACTCAGAAAACATGGATGTGTGCAGGGAAACGACAAAAATTGAAGGTGATGAGCCTCTTGCAGAAGAGCCCATTAAACCAGATAAGTCTTCCACTTTGCATGATGATATGGAAGACAACCATCAATCTCCTACCCAAGAGAACAAAGCAATGGTTGAACCTAAGCATGAGGAAGATCAGGTCGAGACCAATACTGCTGGTCAAGAGAAGGTTCTCAAGAAGCCGGACAAAATCGTCCCATGTCCACGCTGCAACAGCTTAGACACAAAGTTCTGCTACTACAACAATTACAACGTTAACCAACCCAGGCACTTCTGCAAGAATTGCCAGAGATATTGGACAGCTGGGGGAACAATGAGAAACGTTCCTGTGGGTGCTGGACGGCGGAAGAATAAGCACGCGGCCTCACAGTACCGTCACATAATGATGTCCTCTGACGGAATGCCAACCACTAGAGTTGACCCCCCTGATTCCACCAATCACCAAGTTCTCTCATGCGGGGGGTTTTCTGCTCCTTCAAGGCCACCTCTGAAGGGAAACAGTACGGTCCTAAAGTTTGGCACTGACACACCTCTTTGTGAATCCATGGCAACCGTGCTGAATCTTGGAGATCAGAAGCGAAATGTTGAGATTGGTGCTGTGGTGTGTGGAGAAAATGGAGACGAACCCTCCTCATGCGGGTCTTCTGTAACAGCTTCTACTTGCCATGAAAATGAACTGCCCAAAAATGTGGCTAAAATGGAGCAAGGTAGCGTGCCAGTCTGCTGTAACGGACCTAGTCCTCCTACACATCCTATGCAGTGTTATCCTGGTCCTCCATGGCCTTACCCTTGGAATTCAGGTTGGAACAATGTAGCTGCTATGGCAGCAGGTCGCTGCTCTTCAGAGATGGTGTATGGAGCAGATAATGGTAATTCCAATCCGGTCCAGTGGGGCCCCCCATCGATGGTGGCAGCTCCTGCCTTTTGCCCACCAAGCATCCCTTTCCCATTTATGCCTGCCTCCTATTGGGGTTGCATGCCTAGCTGGGCTGGCGGTGCATGGAATATGCCATGGGTTGGATCTAACGGCAGTGTATCCCCGTCGTCCTCCACTAGCAATAGTGGCTGTTCAGGCAATGGCTCTCCAACCTTAGGCAAGCATTCCAGAGATGCAAATTTACAGGGGGAAGAGAAACCAGAAAAGTGTCTTTGGGTTCCGAAGACGCTGAGAATAGATGATCCAGATGAGGCTGCAAAGAGTTCTATCTGGGCTACTCTCGGTATTAAGCCCGATCAGAATGAACCCATAACAAAAGGTGGTATTTTCAAAGCTTTCCAGCCCAAGACAGAAGGCAAGGATCATGCGTCAGATGCCACACAGGTCTTACAAGCAAACCCGGCAGCTTTTTCTCGCTCACAGTCATTCCAAGAGAGCACGTAA 1539 0.4906 MSEIKDPAIKLFGKTISFPESQIPAESEEKSDLDCQITEDSENMDVCRETTKIEGDEPLAEEPIKPDKSSTLHDDMEDNHQSPTQENKAMVEPKHEEDQVETNTAGQEKVLKKPDKIVPCPRCNSLDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHAASQYRHIMMSSDGMPTTRVDPPDSTNHQVLSCGGFSAPSRPPLKGNSTVLKFGTDTPLCESMATVLNLGDQKRNVEIGAVVCGENGDEPSSCGSSVTASTCHENELPKNVAKMEQGSVPVCCNGPSPPTHPMQCYPGPPWPYPWNSGWNNVAAMAAGRCSSEMVYGADNGNSNPVQWGPPSMVAAPAFCPPSIPFPFMPASYWGCMPSWAGGAWNMPWVGSNGSVSPSSSTSNSGCSGNGSPTLGKHSRDANLQGEEKPEKCLWVPKTLRIDDPDEAAKSSIWATLGIKPDQNEPITKGGIFKAFQPKTEGKDHASDATQVLQANPAAFSRSQSFQEST* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g00071 512 MobiDBLite consensus disorder prediction 89 110 - -
Eupl01g00071 512 MobiDBLite consensus disorder prediction 395 421 - -
Eupl01g00071 512 MobiDBLite consensus disorder prediction 395 432 - -
Eupl01g00071 512 MobiDBLite consensus disorder prediction 25 82 - -
Eupl01g00071 512 Pfam Dof domain, zinc finger 116 172 IPR003851 GO:0003677|GO:0006355
Eupl01g00071 512 ProSitePatterns Zinc finger Dof-type signature. 120 156 IPR003851 GO:0003677|GO:0006355
Eupl01g00071 512 ProSiteProfiles Zinc finger Dof-type profile. 118 172 IPR003851 GO:0003677|GO:0006355
Eupl01g00071 512 PANTHER CYCLIC DOF FACTOR 2 1 512 IPR045174 GO:0003700|GO:0006355
Eupl01g00071 512 MobiDBLite consensus disorder prediction 1 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g00071 Eupl-Chr1 2399160 2402920 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g00071 4 512 C2C2-Dof Transcription Factor Family AT5G39660 37.876 9.68e-86 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Eupl01g00071 zf-Dof 5.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g00071 - - ming:122062038 731.865