Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1931 ATGCAAGACCCAACAGCCTTCCAAGCCATCAAACCTCAATTTCCTGAACAAGAACAACTTAAATGCCCACGTTGTGACTCCACAAACACCAAATTCTGCTACTACAACAACTACAACCTCTCACAGCCACGCCATTTTTGCAAGAATTGCAGAAGGTATTGGACCAAAGGAGGTGCTCTTAGGAACATCCCAGTTGGTGGTGGAAGCAGGAAGAACACAAAAAGATCATCCAGCAACTCCAAACGCCCTGCATCATCTGCCTCATCATCTTCCCCATCACCATCAGTTTCCACTGCAGCAGCACAGGCTTCATCAGCTCCCGAGCCTGACCCGACTCGGGTTTACGCCGGCCCGGTTGATCAAGGGCAAAGGGTGCTTAACATTGGTGGAAGTTTCAGTTCCCTTTTGGCATCAACTGGTCATTTGGGGAGCCTCTTGGAGGGGCTGAATACAGGTGGATCAAGTCTAAAAATGGTGCAAATGGATGGATTTGGTGTGAATGCTGCAAGTTCTGGTCCTTCTGCAAATTCGGATGCAGGCAGGACTGCTGGGTTGGATATCCAGAGTAATGGGAATGCAGAGAGCTTTCTGAGCATGCAAAATGGTGATTCAAGCTGTTGGAATGGCAACGGTGGTTGGTCTAACCTAGCAATATATACACCAGGGTCAAGCTTTCAGTAG 681 0.4846 MQDPTAFQAIKPQFPEQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRKNTKRSSSNSKRPASSASSSSPSPSVSTAAAQASSAPEPDPTRVYAGPVDQGQRVLNIGGSFSSLLASTGHLGSLLEGLNTGGSSLKMVQMDGFGVNAASSGPSANSDAGRTAGLDIQSNGNAESFLSMQNGDSSCWNGNGGWSNLAIYTPGSSFQ* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1931 226 MobiDBLite consensus disorder prediction 61 117 - -
Dod10g1931 226 ProSiteProfiles Zinc finger Dof-type profile. 20 74 IPR003851 GO:0003677|GO:0006355
Dod10g1931 226 MobiDBLite consensus disorder prediction 69 105 - -
Dod10g1931 226 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 2 226 IPR045174 GO:0003700|GO:0006355
Dod10g1931 226 PANTHER DOF ZINC FINGER PROTEIN DOF3.1-LIKE 2 226 - -
Dod10g1931 226 Pfam Dof domain, zinc finger 18 74 IPR003851 GO:0003677|GO:0006355
Dod10g1931 226 ProSitePatterns Zinc finger Dof-type signature. 22 58 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1931 Dod-Chr10 40966718 40969138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1931 5 146 C2C2-Dof Transcription Factor Family AT1G51700 58.503 3.89e-48 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Dod10g1931 zf-Dof 2.6e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1931 - - gmx:100798927 288.885
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1931 10 40966718 40969138 Dod10g1931 10 40966718 40969138 ECH
Dod10g1931 10 40966718 40969138 Dod06g2697 06 57806031 57808571 PCT