Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g0780 ATGCACCGGCGGCGAGCTCCTCCGTCCGCCGCCGCCGTTTCCGTTGTTGATGGCCCTGCAGATGACGTGGCAGCCGAACCTCCTCAGCCAGAAGCGCAAGACCGGTCCCCCTTTAGGTCTCCGCAACCTCGGCAACTCCTGCTACCTCAACAGCGTGACTCTGCGGCTTCGTCTTCGTCGAATTGTCCTTTCTGTATCTTGGAGAAGCAGATTGCGCGCTCACTGCGTGTGGATCTCGTTCACGACGCGCCGTCCAAGATCCAGAGCTGTCTCCGGATCTTCGCGGAGCATTTCCGGTGCGGGAGGCAGGAGGACGCGCACGAGTTCCTACGGTACGTGATTGACGCCTGCCACAACACCTGCCTCCGCCTCAAGAAGCTCCGCCGCAAGGGCGGCGGCGGAGGAGGTGAGGACGGTGGCGGGAGCAGTAGTACGGTGGTGAAGGAGATCTTCGGAGGTGCGCTGCAGAGCCAGGTGAAGTGCCTCTGCTGCGGGTACGAGTCGAATAAGGCTGATGAGATTATGGATATAAGTCTTGACGTTTTTCATAGTAACTCGCTTAGAGATTCGATGCAAAAATTTTTCCAGCCTGAGGTTTTGGACGGGAACAATAAGTACAAGTGTGATAGTTGTAAGAAATTGGTGCGGGCAAAGAAGCAGATGAGTATACTTCAAGCTCCTAATATTCTTGTGATACAGCTCAAGAGATTTGAGGGCATATTGGGCGGGAAGATTGATAAGGCTGTTGCATTTGAAGAGGTTTTGGTGCTTTCTAACTTCATGTGCAAAGCTAGCCAGGATCCACCGCCAGAATATAAGCTCTTTGGTACTATTGTGCATTCAGGCCACTCCCCGGAGTCTGGTCACTATTACGCTTACATAAAGGATGCAATGGGTCGGTGGTATTGTTGTGATGATTCTTGTGTAACAGTTGCAACCTTGCAAGAAGTTTTGTCAGAAAAGGTTTATATTCTTTTTTTCTCTCGAACTAACCAAAGACCAGTATCAGTTAGTAATTCTCTTGCTTCAAAAGGAGTAAAGCCGCATCATTCCAATGGGAGTCAGGCCACTGAGTTCCTAAAGGTTGATGTACCACTGAAAACAGTGCATCCAAAACCAAATTCTGAGCAATCTACTTGGAAGGATATGCCAAGGGTATCTAAGATTAGTAAAGGACCTTCCAGCTCACGAGTTAAGTTTGACATTAATGGACATTCTACTTCCAAGAGAAATCCTGCTTCTGCAAATGTCAACGGGAAAGTTGACATTTCTAAGAATCAGTCCATGGTAGTAAATGGGCATGTGAAGGAGACAGTTTCTTTGGAGATTGGCAATAAAGACCCTTCATCATTACCAATCAGGAATGGCTCTGAGAAAGATAAAGTTGACGTTTCTGAAAAATCAAAAGGAAAGGATTCAACATTAACAAACGGATACACTGATATTCAGTCAGTTAATATCCGTTCGGCAAAATCAGATTCTAGGGAAGACACTAATGGAAGCACAATAATAACGGGTAGGGGGCTTGACAACTTAAAGCAAGAAAGCAATGGCTTCAATGAACCTAAAATACTGGGAAAGAGAAAAGAGCAGGAGGCTCCTAGCATGTTGCTTGCACATGATGGTCAGTCTCGAGCAAGAGTTGAAGAATTCAAGGACATTCTTGGGAAAGAAGCGAAATCTGTTTTGAGGTCTTGTGGTTGGACAGATAAAGTCTGTGATTTCATGCGTTCTAGAAAGAGGCGACGGGCACAAGAAGCTGGACATCTAACAAGTGGAGATGAAACAAGGAAGTTGTTAATAGGGGATGCTAAGGAAGCTTTCTTATCAAAGATTCCTGAGTCATTGAGAAAGGATCTGATTGAACGTCTCCTGTCATTCAGCCAAGAAAAATGTACAATTTGA 1905 0.4646 MHRRRAPPSAAAVSVVDGPADDVAAEPPQPEAQDRSPFRSPQPRQLLLPQQRDSAASSSSNCPFCILEKQIARSLRVDLVHDAPSKIQSCLRIFAEHFRCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGGGGEDGGGSSSTVVKEIFGGALQSQVKCLCCGYESNKADEIMDISLDVFHSNSLRDSMQKFFQPEVLDGNNKYKCDSCKKLVRAKKQMSILQAPNILVIQLKRFEGILGGKIDKAVAFEEVLVLSNFMCKASQDPPPEYKLFGTIVHSGHSPESGHYYAYIKDAMGRWYCCDDSCVTVATLQEVLSEKVYILFFSRTNQRPVSVSNSLASKGVKPHHSNGSQATEFLKVDVPLKTVHPKPNSEQSTWKDMPRVSKISKGPSSSRVKFDINGHSTSKRNPASANVNGKVDISKNQSMVVNGHVKETVSLEIGNKDPSSLPIRNGSEKDKVDVSEKSKGKDSTLTNGYTDIQSVNIRSAKSDSREDTNGSTIITGRGLDNLKQESNGFNEPKILGKRKEQEAPSMLLAHDGQSRARVEEFKDILGKEAKSVLRSCGWTDKVCDFMRSRKRRRAQEAGHLTSGDETRKLLIGDAKEAFLSKIPESLRKDLIERLLSFSQEKCTI* 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g0780 634 MobiDBLite consensus disorder prediction 496 518 - -
Dod10g0780 634 MobiDBLite consensus disorder prediction 369 419 - -
Dod10g0780 634 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1 330 IPR028889 -
Dod10g0780 634 MobiDBLite consensus disorder prediction 1 43 - -
Dod10g0780 634 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 19 59 566 - -
Dod10g0780 634 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 272 290 IPR018200 GO:0004843|GO:0006511
Dod10g0780 634 MobiDBLite consensus disorder prediction 442 518 - -
Dod10g0780 634 MobiDBLite consensus disorder prediction 471 489 - -
Dod10g0780 634 Pfam Ubiquitin carboxyl-terminal hydrolase 83 327 IPR001394 GO:0004843|GO:0016579
Dod10g0780 634 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 59 566 - -
Dod10g0780 634 SUPERFAMILY Cysteine proteinases 57 334 IPR038765 -
Dod10g0780 634 MobiDBLite consensus disorder prediction 371 419 - -
Dod10g0780 634 MobiDBLite consensus disorder prediction 453 470 - -
Dod10g0780 634 Gene3D Cysteine proteinases 36 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g0780 Dod-Chr10 23007552 23014228 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g0780 62 334 Miscellaneous Gene Families AT2G24640 37.545 5.94e-48 174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g0780 10 23007552 23014228 Dod10g0780 10 23007552 23014228 ECH