Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g0610 ATGGGCCACCGTTGCTGCAGCAAGCAGAAGATCAAAAGAGGACTGTGGTCTCCTGAAGAAGATGAGAAGCTTATCAAATATATCACTACTCATGGCCACAAAAGTTGGAGTTCTGTCCCAAAGTTTGCAGGTTTGCAGAGATGTGGAAAGAGTTGCAGATTGAGATGGATAAATTATCTGAGGCCAGATCTGAAGAGGGGTTCCTTCACTGCAGAAGAGGAGCAGATAATAATTGACATTCATAGAATCCTGGGAAACAGATGGGCCCAAATAGCCAAGCACCTCCCAGGAAGAACAGACAATGAGGTCAAGAATTTCTGGAACTCTTGCATTAAAAAGAAGCTCATCTCTCAAGGGTTAGATCCACAAACCCACACTCTCCTTGCTTCTCATAGGAGAACCTCAGCTTCTACCATCTCCAATATCCATCAAAACTCCAATTCCATTTTCATTCTTAGTTCACAAGACCCAAATGCTCCCATTGAAAGCAGTCAAACTTTTTCTTCACTACCTAAGGCTCAACAACCAAATGTTCTTCAAACCCCCTCTAGCACTATTTCCTCTGAATATCATAATAAATTCTCAGATTTTCCGTATGAACCATCAATAATTGAGAATAATGCCTCCAACATTTGTTCTCCTTCTTGCATGAACCCCTCTGTGGTTGGAGTATTGTCCAGCAATAATGAGAGTAGGATGTGGGAGTCAATAGCTGATGCTGAAGATTTGGGAGTTCAAAGATTGGAAGAAGGGATGCAAGAACAGGTGCAGCAATTAGAGAAGGACAAGACTTGTGGGAAGGGAATTGATGATGAAATGAGAGAAGCTAATAATTATAGGGGGAGTCTTGAAACCAATGCTTCTTTGGATAGCTCTAACTTTGATTTTGGGTTGTTGGAAAGTGTACTTAACTCTGAATTTGTGTCTCATGATATCAGCTATATGGATGAATTTGCGTGGAACTTTTAG 969 0.4118 MGHRCCSKQKIKRGLWSPEEDEKLIKYITTHGHKSWSSVPKFAGLQRCGKSCRLRWINYLRPDLKRGSFTAEEEQIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLISQGLDPQTHTLLASHRRTSASTISNIHQNSNSIFILSSQDPNAPIESSQTFSSLPKAQQPNVLQTPSSTISSEYHNKFSDFPYEPSIIENNASNICSPSCMNPSVVGVLSSNNESRMWESIADAEDLGVQRLEEGMQEQVQQLEKDKTCGKGIDDEMREANNYRGSLETNASLDSSNFDFGLLESVLNSEFVSHDISYMDEFAWNF* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g0610 322 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Dod10g0610 322 SMART sant 12 62 IPR001005 -
Dod10g0610 322 SMART sant 65 113 IPR001005 -
Dod10g0610 322 CDD SANT 68 108 IPR001005 -
Dod10g0610 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Dod10g0610 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Dod10g0610 322 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Dod10g0610 322 PANTHER MYB DOMAIN PROTEIN 55 1 310 - -
Dod10g0610 322 Gene3D - 68 138 - -
Dod10g0610 322 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Dod10g0610 322 CDD SANT 16 60 IPR001005 -
Dod10g0610 322 PANTHER BNAC05G40480D PROTEIN 1 310 - -
Dod10g0610 322 Pfam Myb-like DNA-binding domain 66 109 IPR001005 -
Dod10g0610 322 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Dod10g0610 322 Gene3D - 10 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g0610 Dod-Chr10 19363925 19365759 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod10g0610 Myb_DNA-binding 6.6e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g0610 10 19363925 19365759 Dod10g0610 10 19363925 19365759 ECH