Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g0059 ATGTTGTTCCCTGCAGTACTGCAGAAGACTGGAATTACAGCTTTTGATCTTAGCAAGGTCATAGAGAGTTTCATTAGACATGAGGAATCTCTCCCTAGAGAATTGAGGAGACACCTGAATTCATCGGAAGAACGTCTTTTGGAGAGCATGGTATGGGAAAAGGGTTCCTCATTGTATAATTCGTTGACGGTTGCTAGGCCTTTCCTTTCTGCAGAAATAGATCGTCTTGGGCTGTTAGCTGAACCATTGCCATCATTGGATGAAACTGCAATGCGTGTCGCTCAGAATTGGGATATCAGATCTCCAAAGCGACTATGCACAGAATATCGAAGTTCCTTAGTGGAACAAAATTCATTTGCTTCACCAGTGAAAGATGGGCTTCTACCAAAGTCAAAGCTGGCCCGTCCTCCAATGCAGTCAGCTTTTGCCAGTCCTACAAGACTGAATCCTGGAGGTGGAGGGGAAACTTGCGCTGAAACCGCGATCAATATCATTTTTGGCAAGATTACTAAGTTGGCAGCAGTCAGAATAAGTGGCATGGTTGAAAGGTTGAAATTATCTCTGCAGATGAGGGAGAACGTATACTGTCTTTTCCAACAAATCCTAAATCAATGGACCTATCTCTTCTTCAACCGCCATATTGACCAAATCATTTTGTGTTATTTCTATGGAGTCTCAAAGATTTCTCAACTGAACTTAAATATCAAGGATATACTATACAAATATAGAAAGCAACCACAATCCAAACCAGAACTTTTTCGCAATGTTTTTGTTGATTGGTCATTGGCATGTTGTAATGGAAAAACTGGTCAGGAGCATGTTAGCATCATTACGTTTTACAATGAAATATTCATCCCCTCTGTCAAGCCTCTACTTGTTGAACTTGGCTCTGGGGGGACCAGGAAAAGTAACCAGATAACTGAAATCAATAATGGCCGTTTAGCCCAGTGTCTGGGATCTCCTAAAATATCTCCTTTTCCAGGCCTTCCTGACATGTCTCCAAAAGAAGTATCTACCACATAA 1023 0.4154 MLFPAVLQKTGITAFDLSKVIESFIRHEESLPRELRRHLNSSEERLLESMVWEKGSSLYNSLTVARPFLSAEIDRLGLLAEPLPSLDETAMRVAQNWDIRSPKRLCTEYRSSLVEQNSFASPVKDGLLPKSKLARPPMQSAFASPTRLNPGGGGETCAETAINIIFGKITKLAAVRISGMVERLKLSLQMRENVYCLFQQILNQWTYLFFNRHIDQIILCYFYGVSKISQLNLNIKDILYKYRKQPQSKPELFRNVFVDWSLACCNGKTGQEHVSIITFYNEIFIPSVKPLLVELGSGGTRKSNQITEINNGRLAQCLGSPKISPFPGLPDMSPKEVSTT* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g0059 340 SUPERFAMILY Cyclin-like 1 64 IPR036915 -
Dod10g0059 340 PANTHER BNACNNG22930D PROTEIN 94 339 - -
Dod10g0059 340 Gene3D - 108 316 - -
Dod10g0059 340 Pfam Retinoblastoma-associated protein B domain 162 289 IPR002719 GO:0005634|GO:0051726
Dod10g0059 340 SUPERFAMILY Cyclin-like 160 327 IPR036915 -
Dod10g0059 340 Gene3D - 1 52 - -
Dod10g0059 340 PANTHER BNACNNG22930D PROTEIN 1 91 - -
Dod10g0059 340 MobiDBLite consensus disorder prediction 321 340 - -
Dod10g0059 340 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 1 91 IPR028309 GO:0006357|GO:0051726
Dod10g0059 340 Pfam Retinoblastoma-associated protein A domain 2 62 IPR002720 GO:0005634|GO:0051726
Dod10g0059 340 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 94 339 IPR028309 GO:0006357|GO:0051726
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g0059 Dod-Chr10 2735167 2737132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g0059 1 340 Core Cell Cycle Gene Families AT3G12280 66.484 1.97e-159 470
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Dod10g0059 RB_B 9.2e-34 CL0065
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g0059 K04681 - gmx:100777805 506.908