LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod09g2237	ATGTTGAAATCAGGCATGGGGACTGAGGAGAGAAAGCAGGTGAAGAAACCTGCACAAGCTAGCTCCAGAAAGGGCTGTATGAGGGGCAAAGGTGGCCCTGAAAATGCAAGTTGCACCTACAAAGGTGTAAGACAGAGAACATGGGGAAAATGGGTTGCTGAAATCCGTGAGCCCAATCGTGGTGCTAGGCTTTGGCTTGGCACTTTTGAGACCTCTCATGAAGCTGCCTTAGCTTATGATGCTGCTGCACGAAAGCTTTATGGCCCTGATGCCAAACTCAATCTCCCTGAACATTCTGTGCCTGTGAATTCTCAGTGTCCACCATCTTATGCTAGAAACCAGATTGCCCAAATGGAAAACCTGCATCAAATTCAACAAAACCGAGATATGGCCCCAGCACCTAGCTCCAATTTCAATACTACCCCAGCAGTCTCCATGGCTTCTCAGCAAGTAAGGGTTGGACCAATATACACCAGTGATTCCATTGTGTCTCTCCCCTTGGATACCCCCACTAATACCAACACTAAGCCCTTTGATAACTGTGCCAAGCCCATGGAGATTGAGGAGGAGCTTCGTCCCTTTTGGGGAACAATGAATGAGAGCTTGCCAGTGTTAGATGATTCCATATGGGCAGAAGCTGCCATGTCCCTAGATTTTCCTGTACTTGCAGAGACTGCTATTTACCCAAATGGCAACTTGGCAGATGTGAGTGTTTGGGACACTCCATGGTGCATGTGA	738	0.4797	MLKSGMGTEERKQVKKPAQASSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFETSHEAALAYDAAARKLYGPDAKLNLPEHSVPVNSQCPPSYARNQIAQMENLHQIQQNRDMAPAPSSNFNTTPAVSMASQQVRVGPIYTSDSIVSLPLDTPTNTNTKPFDNCAKPMEIEEELRPFWGTMNESLPVLDDSIWAEAAMSLDFPVLAETAIYPNGNLADVSVWDTPWCM*	246

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod09g2237	245	SMART	rav1_2	39	102	IPR001471	GO:0003700\|GO:0006355
	Dod09g2237	245	ProSiteProfiles	AP2/ERF domain profile.	39	96	IPR001471	GO:0003700\|GO:0006355
	Dod09g2237	245	PANTHER	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D-LIKE	7	241	-	-
	Dod09g2237	245	PANTHER	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C	7	241	-	-
	Dod09g2237	245	Pfam	AP2 domain	39	88	IPR001471	GO:0003700\|GO:0006355
	Dod09g2237	245	Gene3D	AP2/ERF domain	39	97	IPR036955	GO:0003700\|GO:0006355
	Dod09g2237	245	SUPERFAMILY	DNA-binding domain	39	96	IPR016177	GO:0003677
	Dod09g2237	245	MobiDBLite	consensus disorder prediction	1	38	-	-
	Dod09g2237	245	CDD	AP2	38	98	IPR001471	GO:0003700\|GO:0006355
	Dod09g2237	245	MobiDBLite	consensus disorder prediction	1	17	-	-
	Dod09g2237	245	PRINTS	Ethylene responsive element binding protein signature	62	78	IPR001471	GO:0003700\|GO:0006355
	Dod09g2237	245	PRINTS	Ethylene responsive element binding protein signature	40	51	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod09g2237	Dod-Chr9	43609129	43610556	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-ERF	Dod09g2237		AP2	5.5e-15	CL0081

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Dod08g2229	08	50012337	50013737	Dod09g2237	09	43609129	43610556	PCT