Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g2128 ATGCAATCCAACGGCTCTGATTCGCAGCAACAGCAACCGACGGAGCAGAATCAACAGCAGCGGCAACAACATCAGACGCCGGTGGCAGTGGCACAGCAGTGGGTGCCGATGCAGTACCCGGCGGCGGCCATGGTAATGCAGCATCCGATGCTGCCGCCTCATCAGCACTACGCGGCGGCGCCACCTCAGCCTTACATGCCGTACCACCACCATCAGCAGGTGGCGAACGTCGCCCCTCACGTGCACCAGCACCACCAGCATGGATCCAGCGCTGACAACAAGACGATCTGGGTCGGCGATTTGCATCATTGGATGGACGAAAATTATCTCCATCGCTGCTTCGCTGCCACCGGCGAGATTTCCTCCATCAAGGTTATTCGCAATAAGCACACTGGTCTATCAGAGGGTTATGGATTTGTGGAATTCTATTCACACGGCACAGCTGAGAAAGTTTTGCAGAATTATGCTGGGATTTTGATGCCCAACACAGAGCAACCATTCCGCCTGAACTGGGCAACATTTAGCACAGGAGACAAGCGTTCAGATAATGTTCCCGATCTTTCTATTTTTGTTGGAGATTTAGCTGCAGATGTTACAGATAGCGTTTTGCATGAAACATTCTCTAGTAGATACCCTTCTGTTAAAGCTGCAAAAGTTGTTTTTGATGCCAACACTGGCCGTTCAAAGGGTTATGGTTTCGTCAGGTTTGGAGATGATAATGAGAGGACGCAGGCAATGACCGAAATGAATGGTGTTTACTGTTCTAGCAGGCCTATGCGTATTGGAGCTGCAACTCCTAGGAAATCATCTGGCTATCAAGGAGGCCAGTCAAATGGCACATCCAGCCAATCTGAAGCTGATTCTACAAACACAACTATATTTGTTGGAGGACTCGACCCTAATGTTACAGCTGAAGATCTCAGGCAACCATTCTCCCAATATGGTGAGATAGTTTCTGTTAAGATACCTGTTGGAAAAGGATGTGGTTTTGTACAATTTGCAAACAGAAATAATGCTGAAGAGGCGTTGCAGAAGCTAAATGGGACAACGATTGGCAAGCAAACAGTTCGTCTCTCTTGGGGCCGCAATCCGGCAAATAAGCAGTTTAGAATGGACTTCGGCAGTCCCTGGAGTGGGGCGTATTATGGGGGACCTGTGTATGATGGTTATGGATATGCTTTGCCGCCATCTCATGACCCAAGCATATATGCTGCGGCTTATGGGGCTTATCCCCTTTATGGAGGCCACCAACAGCAAGTAAGCTGA 1266 0.4913 MQSNGSDSQQQQPTEQNQQQRQQHQTPVAVAQQWVPMQYPAAAMVMQHPMLPPHQHYAAAPPQPYMPYHHHQQVANVAPHVHQHHQHGSSADNKTIWVGDLHHWMDENYLHRCFAATGEISSIKVIRNKHTGLSEGYGFVEFYSHGTAEKVLQNYAGILMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAADVTDSVLHETFSSRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERTQAMTEMNGVYCSSRPMRIGAATPRKSSGYQGGQSNGTSSQSEADSTNTTIFVGGLDPNVTAEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGRNPANKQFRMDFGSPWSGAYYGGPVYDGYGYALPPSHDPSIYAAAYGAYPLYGGHQQQVS* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g2128 421 MobiDBLite consensus disorder prediction 264 287 - -
Dod09g2128 421 Gene3D - 93 173 IPR012677 -
Dod09g2128 421 SUPERFAMILY RNA-binding domain, RBD 66 175 IPR035979 GO:0003676
Dod09g2128 421 MobiDBLite consensus disorder prediction 269 287 - -
Dod09g2128 421 CDD RRM3_NGR1_NAM8_like 290 361 - -
Dod09g2128 421 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 291 363 IPR000504 GO:0003723
Dod09g2128 421 MobiDBLite consensus disorder prediction 1 28 - -
Dod09g2128 421 Gene3D - 279 393 IPR012677 -
Dod09g2128 421 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 96 163 IPR000504 GO:0003723
Dod09g2128 421 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 189 258 IPR000504 GO:0003723
Dod09g2128 421 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 293 356 IPR000504 GO:0003723
Dod09g2128 421 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 27 420 - -
Dod09g2128 421 SMART rrm1_1 188 262 IPR000504 GO:0003723
Dod09g2128 421 SMART rrm1_1 292 359 IPR000504 GO:0003723
Dod09g2128 421 SMART rrm1_1 95 170 IPR000504 GO:0003723
Dod09g2128 421 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 94 174 IPR000504 GO:0003723
Dod09g2128 421 SUPERFAMILY RNA-binding domain, RBD 186 364 IPR035979 GO:0003676
Dod09g2128 421 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 187 266 IPR000504 GO:0003723
Dod09g2128 421 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47C-RELATED 27 420 - -
Dod09g2128 421 Gene3D - 174 278 IPR012677 -
Dod09g2128 421 CDD RRM2_SECp43_like 186 265 - -
Dod09g2128 421 CDD RRM1_SECp43_like 95 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g2128 Dod-Chr9 42739333 42743501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g2128 96 371 Eukaryotic Initiation Factors Gene Family AT2G23350 28.571 5.46e-29 117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g2106 08 48713887 48718821 Dod09g2128 09 42739333 42743501 PCT