Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g2099 ATGCAAGGGCACAGAGGTACAATTGGTTCCATGCCTGAAACCTTAGAATTTGACCGTGGATCTACATCAAGTAATGCTACTGTGGATCAGCAGATTTGCTGGACTAATATGCGGAATCCTGGGGAAAATGGAACACCTGAATATTTACTATCTCCTGGTGATATAAACACATCTTATGTGAATTCCATAAGCCATGAATGGCAAAATTTGAGTGGATGGAGCTTAGGCGAGCCAAGTTCCAGTAATACACCAAACGAGATTGACAATAATGAGCAGAAAAGAGAACTTGGATGGTCATCATCTGTAAGTGTTGGTGGCTTAGCAGGTCCGAGACTAGAAGAAAGGCGCCTTGAACCAGCCAATGCTCTTTCACTGGACAATGTCAATACAGGTCCTATGTATATCCACAGCTTCAACTCTCATTCAACATCCCAAAATCTCAACTTCAATGCAGGTTTAGCAGGCAGTGATGCAGATAATAATCAACAATCAGAGTACCCTAACTTGCACAAGGCTAGTGGATCAGCAAATGAGTGTATTCCACCTGATGTTGGCTCTGATTCTTTTCTGCTTCCTTCTGAAACTAATGGTTTCTTCGTAGAAGATACTGATGGTAGGCCAGGTTGTTCTCGGGATACTCGCCGTGTATCTTGTAAAAGGAAGGCTGTTGAAGCAAATGCTGGACAACCTTCAGATGGTGGAAGTTGTAGCTACGCTCAGCATACAGATGGCAGTGCTTGGCACACTCTTCCTGCTCAGGATAATTCCAGGAGCAATTTAAGCAGAACTTTTTCCTCAGAACAGATAAACTCAATTCTTGGCCTGGGTTTGGGGAATGAAGCATCTAATAGTGCTTCTGATTCAAATGTTGCTGGAAGCTCAGAAAGCTTCCATAGGAATTCCCGTTTGAGGATAAATCCTTCAAATGAACCAAGTTCTGTTCCTCCCACTGTGTTCTCAACCGGGAATGTGATTAGGCATTCTGGTGTTTCTTCATCCACTCCTATCCCTCAAAGTACTCATCCTGTTGATAATTCTCTCAACTTGAGGTCAGCACCACCTATAGATAATACGATTTCTCAAAGCCAGCCGCTTGTAGTCAATGTTCCTCCTTTGCCAAGGAACAGACAATCATTCAGATGGAGTAGTGGTTCTAACTCAAGAATTATCCGTCCATCAAACTCAATTACATCTGCAGACAGGGATAATATACAGCGGGAGGAAGCAAGCTCAAGAACCATGTCTTCAAATATTTTAGAACACCCAATTTTGGTACCTGGAAATGATTTAAGAAGTTTAGTTCAAAATCCAGCATTTAGGGCTTCAAGTTCAAGTAGTGCAAATTTGAGTATTCCAGGAAATGTTGCTTCTTCATCCCAAACTGGATCAAATTCAGCTACCAATCCTTCATCTTCTTCAACTTGGGTTTCTCGTCCTAATCCTCCACAGCATCCCCGGAGGTTATCTGAATATGTCCGTCGCTCCTTGTTTTCTGCTGGCCCTGATGCTACTGGCAGCCCAAGCAATAACTATTCTTCATTGCGCTCTGGTCCCTCTGCATCTGAATCAAGGGTGTTATCATCTGGGGCACACCCAAGATCATCTTCATGGTTGGAGAGGCAAGGTGATAGTGACATTGGAATTCCTTATTCATTACGAACTTTGGCTGGGGCAAGTGAAGGAAGTGGCAGGCTTGTATCTGAGCTCCGCAATGTTTTGGGTCTTATGCGCCGGGGTGGGAACCTGCGATTTGAGGATGTTATGATCCTCGACCAATCAGTAATTTCTGGAATGGCTGATATTCATGATCGGCACAGGGATATGAGACTTGATGTGGATAACATGTCTTATGAGGAGTTATTGGCTCTGGAGGAGCGCATAGGAAATGTGAGTACTGGATTGAGTGAGGAAACCATATTGAAACTTTTGAAACAGAAAAAGCATTCAAGTGAAACAGGATCTCAGCTTGATGCAGAGCCCTGTTGTGTTTGTCAGGAGGATTATGGTGATGGAGATGATATTGGAACGCTTGATTGTGGGCATGATTTCCACAGCAACTGTATTAAACAGTGGCTAATGCATAAAAATCTGTGTCCCATTTGTAAGACAACTGGCTTGGCAACATGA 2127 0.433 MQGHRGTIGSMPETLEFDRGSTSSNATVDQQICWTNMRNPGENGTPEYLLSPGDINTSYVNSISHEWQNLSGWSLGEPSSSNTPNEIDNNEQKRELGWSSSVSVGGLAGPRLEERRLEPANALSLDNVNTGPMYIHSFNSHSTSQNLNFNAGLAGSDADNNQQSEYPNLHKASGSANECIPPDVGSDSFLLPSETNGFFVEDTDGRPGCSRDTRRVSCKRKAVEANAGQPSDGGSCSYAQHTDGSAWHTLPAQDNSRSNLSRTFSSEQINSILGLGLGNEASNSASDSNVAGSSESFHRNSRLRINPSNEPSSVPPTVFSTGNVIRHSGVSSSTPIPQSTHPVDNSLNLRSAPPIDNTISQSQPLVVNVPPLPRNRQSFRWSSGSNSRIIRPSNSITSADRDNIQREEASSRTMSSNILEHPILVPGNDLRSLVQNPAFRASSSSSANLSIPGNVASSSQTGSNSATNPSSSSTWVSRPNPPQHPRRLSEYVRRSLFSAGPDATGSPSNNYSSLRSGPSASESRVLSSGAHPRSSSWLERQGDSDIGIPYSLRTLAGASEGSGRLVSELRNVLGLMRRGGNLRFEDVMILDQSVISGMADIHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEETILKLLKQKKHSSETGSQLDAEPCCVCQEDYGDGDDIGTLDCGHDFHSNCIKQWLMHKNLCPICKTTGLAT* 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g2099 708 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 707 IPR045191 GO:0061630
Dod09g2099 708 MobiDBLite consensus disorder prediction 281 415 - -
Dod09g2099 708 MobiDBLite consensus disorder prediction 443 480 - -
Dod09g2099 708 MobiDBLite consensus disorder prediction 281 368 - -
Dod09g2099 708 ProSiteProfiles Zinc finger RING-type profile. 661 702 IPR001841 -
Dod09g2099 708 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE ISOFORM X1 1 707 - -
Dod09g2099 708 MobiDBLite consensus disorder prediction 1 24 - -
Dod09g2099 708 MobiDBLite consensus disorder prediction 74 105 - -
Dod09g2099 708 MobiDBLite consensus disorder prediction 498 540 - -
Dod09g2099 708 MobiDBLite consensus disorder prediction 501 540 - -
Dod09g2099 708 MobiDBLite consensus disorder prediction 375 400 - -
Dod09g2099 708 Pfam Ring finger domain 661 702 IPR001841 -
Dod09g2099 708 CDD RING-H2_TTC3 660 702 - -
Dod09g2099 708 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 624 705 IPR013083 -
Dod09g2099 708 SUPERFAMILY RING/U-box 660 704 - -
Dod09g2099 708 MobiDBLite consensus disorder prediction 443 486 - -
Dod09g2099 708 SMART ring_2 661 701 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g2099 Dod-Chr9 42504790 42511071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g2099 1 708 C3H Transcription Factor Family AT2G15530 32.844 1.45e-83 277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g2063 08 48071279 48078817 Dod09g2099 09 42504790 42511071 PCT