Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g2081 ATGGTTCCGAGTAGATCGGCCATGGCCATGATGGCCTTGGTGTTCATGGTCTTCGCAGTGTCGCATGCCTTGGACATGTCGATCATCTCGTACGACAGAACCCACGGGGACAAGGGTAGTGCTTGGAGGAGTGACGAGGATGTAACGGCATTGCACGAGGAGTGGCTTGTGAAGCACGGCAAGGTCTACAATGCCCAGGGCGAGAAGGAGAGGAGGTTCCAGATCTTCAAGGACAACCTCAGGTTCATCGACGAGCACAACTCCGAGAACCAGACCTACAAGGTCGGCCTGAACCGGTTCGCGGATCTTACCAACGAGGAGTTCCGGGCCAAGTACCTTGGAGCCAGGATTGATCGCAGCAGGAGGTTGACCAAGGCCAAGACCAGGAGCAATCGCTACGCGCCACGTGTCGGTGACAAATTGCCGGAGTCCGTTGATTGGAGGAAGGAAGGTGCCGTCGTCGGAGTCAAAGACCAAGGAAGTTGCGGGAGCTGCTGGGCATTCTCAACAATCGCTGCGGTGGAAGGGATTAATAAGATAGCAACAGGCGATCTAGTTTCACTATCGGAGCAAGAACTAGTGGACTGTGACAGATCAGTTAATGCAGGATGCAATGGTGGACTCATGGATTATGCCTTTGAGTTCATCATCAACAATGGTGGCATTGACACTGAAGAGGATTACCCCTACGCTGGTGCCGATGGTAGCTGTGACCAAAACAGGAAAAATGCCAAAGTTGTTTCCATTGATGGCTACGAAGATGTTCCCACCAACAACGAGGCAGCCTTGCAAAAGGCCGTTGTAAATCAGCCAGTGAGCATTGCTATGGAAGCAGGTGGCAGGGCTTTCCAGTTATATGAATCAGGTATATTTACGGGAAAATGTGGGACAGCAGTAGACCATGGTGTTACGGCTGTCGGGTATGGCACAGAAAAAGGTGTTGATTATTGGATCGTGAAGAATTCATGGGGTAAGAGCTGGGGGGAATCAGGGTATTTCAGATTGGAACGTAATGTGGCCAGCAAAGAAGGCAAGTGTGGAATTGCGACCGAGGCCTCCTATCCCATAAAGAGTGGCCAAAATCCTCCTAACCCTGGACCATCTCCACCTTCACCTGCGAAGCCATCATCTGTTTGTGATGACTACAATAGCTGTCCTGAGGGCAACACGTGCTGTTGTGTTTGGCCGGTTGGAAATAGTTGCTTTGAGTGGGGATGCTGTGCTCTTGAGGCTGCTATCTGCTGTGAAGATCTCTTAAGTTGTTGCCCCCATGACTATCCTATCTGTGACATTTACAGAGGGACGTGTAAAACGGGCAATAATAACCCATTTGGAGTGAAGGCAATGAAGAGAACTCCAGCTATACGCCTAAACCCCGCTGGGCGTTTGCAGGTGGGAACAAGTTAA 1407 0.5089 MVPSRSAMAMMALVFMVFAVSHALDMSIISYDRTHGDKGSAWRSDEDVTALHEEWLVKHGKVYNAQGEKERRFQIFKDNLRFIDEHNSENQTYKVGLNRFADLTNEEFRAKYLGARIDRSRRLTKAKTRSNRYAPRVGDKLPESVDWRKEGAVVGVKDQGSCGSCWAFSTIAAVEGINKIATGDLVSLSEQELVDCDRSVNAGCNGGLMDYAFEFIINNGGIDTEEDYPYAGADGSCDQNRKNAKVVSIDGYEDVPTNNEAALQKAVVNQPVSIAMEAGGRAFQLYESGIFTGKCGTAVDHGVTAVGYGTEKGVDYWIVKNSWGKSWGESGYFRLERNVASKEGKCGIATEASYPIKSGQNPPNPGPSPPSPAKPSSVCDDYNSCPEGNTCCCVWPVGNSCFEWGCCALEAAICCEDLLSCCPHDYPICDIYRGTCKTGNNNPFGVKAMKRTPAIRLNPAGRLQVGTS* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g2081 468 PRINTS Papain cysteine protease (C1) family signature 301 311 IPR000668 GO:0006508|GO:0008234
Dod09g2081 468 PRINTS Papain cysteine protease (C1) family signature 316 322 IPR000668 GO:0006508|GO:0008234
Dod09g2081 468 PRINTS Papain cysteine protease (C1) family signature 159 174 IPR000668 GO:0006508|GO:0008234
Dod09g2081 468 Pfam Papain family cysteine protease 141 356 IPR000668 GO:0006508|GO:0008234
Dod09g2081 468 MobiDBLite consensus disorder prediction 354 373 - -
Dod09g2081 468 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 159 170 IPR000169 -
Dod09g2081 468 Gene3D Granulin 376 439 IPR037277 -
Dod09g2081 468 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 32 385 - -
Dod09g2081 468 SUPERFAMILY Granulin repeat 377 410 - -
Dod09g2081 468 SMART GRAN_2 379 436 IPR000118 -
Dod09g2081 468 SMART Inhibitor_I29_2 52 108 IPR013201 -
Dod09g2081 468 SMART pept_c1 141 356 IPR000668 GO:0006508|GO:0008234
Dod09g2081 468 SUPERFAMILY Cysteine proteinases 46 356 IPR038765 -
Dod09g2081 468 Gene3D Cysteine proteinases 35 358 - -
Dod09g2081 468 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 316 335 IPR025661 -
Dod09g2081 468 CDD Peptidase_C1A 142 355 IPR039417 -
Dod09g2081 468 Pfam Granulin 390 437 IPR000118 -
Dod09g2081 468 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 299 309 IPR025660 -
Dod09g2081 468 Pfam Cathepsin propeptide inhibitor domain (I29) 52 108 IPR013201 -
Dod09g2081 468 PANTHER CYSTEINE PROTEASE 32 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g2081 Dod-Chr9 42340419 42344971 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g2046 08 47814637 47820052 Dod09g2081 09 42340419 42344971 PCT