Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g2052 ATGGCACTGGAAGCTTTGAAATCACCAACCACCGCCACCCCATCCTTCACCTTTGAGGAATCCAATATCGGGTACTTAGAGGCACCCTGGGCCAAGCGAAAGCGTTCAAAGCGTTCCCGCATGGACCCTCACCCTTCATGCTCTGAGGAAGAGTATCTCGCTCTCTGCCTCATCATGCTAGCTCGCGGCGGCAACGCCACCGACACTGCCACCGCTACGCCCGCCGCCAAGCCTCACTCCTCTCCTGCTCCATCTGTTCAAGAGTCGGCGGTTCAACCCACCACCGCAGCAGATCCTTCCCCGGCCGCCAATCTCACTCACAAGTGCTCTGTATGCAACAAAGCCTTCTCCTCCTACCAGGCACTCGGCGGACACAAGGCCAGCCACCGCAAACTCGCCGCCGCCGCCGGCGACGACCACCACTCCACCTCCTCCGCCGTCACCACCAGCTCCGCTGCATCCAACGGTGGAGGTAAGGTCCACGAGTGCTCCATCTGCCACAAGTCCTTCCCCACGGGACAGGCGTTGGGAGGACACAAGCGTTGCCACTACGATGGCGGCGCCGCCGCCTCGGCAGCTGCAGCTGGTGGCGGCAGCAGTGCCATCACTGCCTCAGAAGGGGTTGGGTCCACCCACACCGTCAGCCACAGCCACCACCGCGAATTCGATCTCAACCTTCCGGCTTTTCCGGACTTCTCCACCAAGTTCTTCGCCGAAGACGAGGTTTCCAGCCCTCTGCCCGTGAAGAAGCCCCGTCTTTTGACTCTGCCCAAGATTGAAATTCCTCAATTCTAA 795 0.6063 MALEALKSPTTATPSFTFEESNIGYLEAPWAKRKRSKRSRMDPHPSCSEEEYLALCLIMLARGGNATDTATATPAAKPHSSPAPSVQESAVQPTTAADPSPAANLTHKCSVCNKAFSSYQALGGHKASHRKLAAAAGDDHHSTSSAVTTSSAASNGGGKVHECSICHKSFPTGQALGGHKRCHYDGGAAASAAAAGGGSSAITASEGVGSTHTVSHSHHREFDLNLPAFPDFSTKFFAEDEVSSPLPVKKPRLLTLPKIEIPQF* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g2052 264 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 256 IPR044653 GO:0003700
Dod09g2052 264 Pfam C2H2-type zinc finger 107 131 - -
Dod09g2052 264 Pfam C2H2-type zinc finger 160 185 - -
Dod09g2052 264 Gene3D Classic Zinc Finger 105 183 - -
Dod09g2052 264 ProSitePatterns Zinc finger C2H2 type domain signature. 109 129 IPR013087 -
Dod09g2052 264 SUPERFAMILY beta-beta-alpha zinc fingers 107 183 IPR036236 -
Dod09g2052 264 ProSiteProfiles Zinc finger C2H2 type domain profile. 161 183 IPR013087 -
Dod09g2052 264 MobiDBLite consensus disorder prediction 68 102 - -
Dod09g2052 264 ProSitePatterns Zinc finger C2H2 type domain signature. 163 183 IPR013087 -
Dod09g2052 264 ProSiteProfiles Zinc finger C2H2 type domain profile. 107 129 IPR013087 -
Dod09g2052 264 SMART c2h2final6 107 129 IPR013087 -
Dod09g2052 264 SMART c2h2final6 161 183 IPR013087 -
Dod09g2052 264 MobiDBLite consensus disorder prediction 132 157 - -
Dod09g2052 264 PANTHER ZINC FINGER PROTEIN ZAT10 1 256 - -
Dod09g2052 264 MobiDBLite consensus disorder prediction 141 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g2052 Dod-Chr9 42031775 42033372 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g2052 1 261 C2H2 Transcription Factor Family AT1G27730 45.318 1.54e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod09g2052 zf-C2H2_6 3e-13 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g2013 08 47345578 47347157 Dod09g2052 09 42031775 42033372 PCT