Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g2046 ATGGGAACGGATATTCCGGCCAATTACAAGTACATGGGACGCAATTTCAGCATCAACGACGATTCTTCCTCCTCCGCCTTCAGCGACTGCAACAGCGACAGATCTGGCGAATTCCCCACCGCTTCCTCCCAAAGCCGTCGCCTCCTGATTGCCTGCGCCTCCGACAATTCCGACGATTTCATTCTCCAGCTCGTTCACGACCTCGAGTCCTGTTCGATTGACGAGCAGAAACAAGCAGCCATGGAGATCAGATTGCTCGCCAAGAACAAGCCAGAAAACCGACTCAAAATCGCAAAAGCCGGCGCAATCAAGCCCTTAATCTCGCTCGTATCATCCCCAGACCTTCAGTTACAAGAATACGGCGTCACCGCGATTCTGAATCTGTCGCTATGCGACGAGAACAAGGAAGCTATCGCTTCATCGGGAGCGATTAAGCCTCTCGTTCGAGCGCTCAAGACAGGGACTCCAACGGCCAAAGAGAACGCGGCGTGCGCCTTGCTTCGCCTCTCGCAGGTGGAAGAGAACAAGGTCGCGATCGGAAGGGCCGGGGCGATTCCGCCGCTGGTGAACCTTCTAGGAAGCAGGAGGGTTCCGCGCGAAGAAGGACGCGTCGACGGCGCTGTACTCGCTGTGTTCGGTGAGGGAGAACAAGATCAGGGCGGTGAGGGCGGGGATCATGAAGCCGCTGGTGGAGCTCATGGCGGACTTCGAATCCAACATGGTGGACAAGTCGGCGTACGTGCTGAGCGTGCTGGTGGCGGTGGCGGAGGCAAGGGCGGCGCTGGTGGAGGAGGGAGGGATCCCTGTGCTGGTGGAGATCGTGGAGGTTGGGTCGCAGAGGCAGAAGGAGATCGCGGTGGTTACTCTGTTGCAGCTTTGCGAGGACAACGTGACTCACCGCACAATGGTGGCCCGCGAAGGAGCTATTCCTCCGTTGGTTGCTCTGTCTCAGAACGGCACCAATCGCGCCAAGCAAAAGGCGGAGACACTATTAGAACTTCTACGGCAACCAAAATCCGGCAACGCCGCTGCTACTCCTACTTCAGAAGTGTCGGTATAAACCCTCCCATGCCGCCCATCATCTTGTGCCCGCTGCCACAATGGAACAGCGAATAG 1116 0.5735 MGTDIPANYKYMGRNFSINDDSSSSAFSDCNSDRSGEFPTASSQSRRLLIACASDNSDDFILQLVHDLESCSIDEQKQAAMEIRLLAKNKPENRLKIAKAGAIKPLISLVSSPDLQLQEYGVTAILNLSLCDENKEAIASSGAIKPLVRALKTGTPTAKENAACALLRLSQVEENKVAIGRAGAIPPLVNLLGSRRVPREEGRVDGAVLAVFGEGEQDQGGEGGDHEAAGGAHGGLRIQHGGQVGVRAERAGGGGGGKGGAGGGGRDPCAGGDRGGWVAEAEGDRGGYSVAALRGQRDSPHNGGPRRSYSSVGCSVSERHQSRQAKGGDTIRTSTATKIRQRRCYSYFRSVGINPPMPPIILCPLPQWNSE* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g2046 371 SMART arm_5 131 171 IPR000225 GO:0005515
Dod09g2046 371 SMART arm_5 90 130 IPR000225 GO:0005515
Dod09g2046 371 MobiDBLite consensus disorder prediction 294 335 - -
Dod09g2046 371 SUPERFAMILY ARM repeat 59 194 IPR016024 -
Dod09g2046 371 Pfam Armadillo/beta-catenin-like repeat 91 129 IPR000225 GO:0005515
Dod09g2046 371 Pfam Armadillo/beta-catenin-like repeat 132 170 IPR000225 GO:0005515
Dod09g2046 371 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 101 143 IPR000225 GO:0005515
Dod09g2046 371 MobiDBLite consensus disorder prediction 303 335 - -
Dod09g2046 371 PANTHER U BOX DOMAIN-CONTAINING 1 194 - -
Dod09g2046 371 Gene3D - 39 211 IPR011989 -
Dod09g2046 371 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 4-LIKE ISOFORM X1 1 194 - -
Dod09g2046 371 MobiDBLite consensus disorder prediction 247 281 - -
Dod09g2046 371 MobiDBLite consensus disorder prediction 215 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g2046 Dod-Chr9 41979516 41982261 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g2046 64 223 U-box Gene Family AT2G23140 28.358 1.02e-08 55.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g2006 08 47266132 47269086 Dod09g2046 09 41979516 41982261 PCT