Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g1517 ATGTTCCCACAAGAACATAGTCTTATAGGTAGCAGTCTAGAGCAAATGTTGCAGCAGTTCCCATATGCTCCTATGCCAATTCCATCCCCAATAATGGACCGATCAATAACCTCATCAACAAGGTGGAAACCAAACATAGAGGTAGCTCCAAATTGCCCTCGCTGCGCTTCCAGCAACACCAAGTTCTGTTACTACAACAATTACAGCTTGTCACAGCCTAGGTACTTCTGCAAAGGCTGCAGGCGCTACTGGACCAAAGGCGGCTCGCTCCGGAACGTGCCAGTCGGTGGAGGATGCCGCAAGAAGCGCCGTGGAAAGGCGGCGAGGCACTCTCAAAGCGAAAGCCCTTCCACGATGAATAACAACACCGATGGGAATTCTGATTATAGAGAGTCATCAGCAAGTGATCGAGTCAGTGAAACCAACGGGTCACGTGACATAGACATGGCCCTTGTGTTTGCCAAATTCTTGAATCAAAAACCATGCTCTGATCACGAGGAGTTGTTTGAGAGAGCGGGTTGTAATAATAATAATAATGATGATGGGCCATCGTGTTCCAACAATATGTCAACCTCTTTGACAACGCCGGAGAGCGTTGAGATGGAGAACGATGCGGTGGTGCAGCCCCTGCAGAAGGGGCGTGAAATTGATGCTGTTATTGCAGACTCTAATGCTGATGATATTCTTCCTCTAGGACTACTTGGTGGGGTCCCTGTTGAAGGGACAATGGAGAATTTTGGAGGGGAATCAGATCATCAGTTGAGTTTGAGTGGGATTGATGAGTTGGAGGGGTTTGATGTGGTCCAAGATGTTGTGTGGTGTGATAATGATGATGCTATTACATGCTGCTGGCAACCACCACTACCATCACCACCATTACCCATGATGCAGATGCAGATGCAGTTGCAGGAGCTGGAGTACTCCATGTCGCCGTTATTAAATGCGGAGGATGATCATCAAGAACTGTTGCCCATTTGTACTTCTTCTAATAGCATGAATTTAATAAGCGAAGGCTGGAGTACCAATTGGAGTCCCTTTGATCTTTCAACTATGGAAGTCTTCTCATCAAGACCTTAA 1077 0.4698 MFPQEHSLIGSSLEQMLQQFPYAPMPIPSPIMDRSITSSTRWKPNIEVAPNCPRCASSNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKKRRGKAARHSQSESPSTMNNNTDGNSDYRESSASDRVSETNGSRDIDMALVFAKFLNQKPCSDHEELFERAGCNNNNNDDGPSCSNNMSTSLTTPESVEMENDAVVQPLQKGREIDAVIADSNADDILPLGLLGGVPVEGTMENFGGESDHQLSLSGIDELEGFDVVQDVVWCDNDDAITCCWQPPLPSPPLPMMQMQMQLQELEYSMSPLLNAEDDHQELLPICTSSNSMNLISEGWSTNWSPFDLSTMEVFSSRP* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g1517 358 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 33 280 IPR045174 GO:0003700|GO:0006355
Dod09g1517 358 MobiDBLite consensus disorder prediction 111 129 - -
Dod09g1517 358 ProSitePatterns Zinc finger Dof-type signature. 52 88 IPR003851 GO:0003677|GO:0006355
Dod09g1517 358 ProSiteProfiles Zinc finger Dof-type profile. 50 104 IPR003851 GO:0003677|GO:0006355
Dod09g1517 358 Pfam Dof domain, zinc finger 50 104 IPR003851 GO:0003677|GO:0006355
Dod09g1517 358 MobiDBLite consensus disorder prediction 95 142 - -
Dod09g1517 358 PANTHER DOF ZINC FINGER PROTEIN DOF1.2 33 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g1517 Dod-Chr9 36787984 36789609 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g1517 35 161 C2C2-Dof Transcription Factor Family AT3G52440 57.252 1.05e-44 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Dod09g1517 zf-Dof 2.3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g1517 - - mtr:MTR_3g090430 284.263