Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dod09g0793 | ATGGAAAATCACATGTACAGTTACAGCCCTACCAACTACAGACTAGCAGCAGCTGCAGCAGCACGAGGGGCGTCCCCTGCTCGATTCCGTGACCCGGACACCATGTTCCTCTCTCACCACCGCTCAGATGCCGCTGCTGCTCTCCGCTTCCCCTCTTCCGCCGCCGACGCCGACATTGGGCCGCCTGGGGTTCCTTCCAGAATCTCTTCCTCCGCCGCCGCCGCCGCCGTCATTGGACCCAACTCCTCTTCCTCAGCAGGCCATTTGCTCTCTCAGCCCTCTTCTTGGCCTGCTGCCATCGCTGCCGCCGCCGCCGCCGCCGCCGCCGCAAATGTCGGCCCTGCTGCGCTCGACCTCAAACGCTCTTCTGAAACACTCTACCATCCAACAATTTTGGGTATCCAAAACACAATTGGGCAAAGTGAAGCTTGGTATTCTACAAACTCACTAGCCAAGCGCCCTAGATACGAAAGTGGAAGCAATTTGCCTATATATCCACAGAGGCCAGGAGAGAAGGATTGTGCCCACTATATGCTCACAAGAACCTGTAAATTTGGAGATGGCTGCAAGTTTGACCATCCTATTTGGGTTCCTGAGGGTGGAATCCCAGATTGGAAAGAGGTTCCAAATATTGCTACAAGTGAAACTCTTCCTGAGAGACCAGGAGAACCAGACTGTCCATACTTTCTTAAAACTCAGAGATGCAAGTTTGGTTCAAGGTGCAAGTTTAACCACCCAAAGGTTTCCTCTGAAAATGCTGATGTTTCTACCTTACCTGAGAGGCCATCAGAGCCCCTTTGTGCGTTCTATGTGAAGACTGGAAGATGTAAATTTGGTGCTGCATGTAAATTCCATCACCCAAAAGGCATTCAGATTCAGATGTCCGATGAACTGAGTCAAACTGCTGAACTGACAAAAGCAAATTCTATGATGGAAGGAATTACAGATACGCAACAACCACTATTGCACAATAGCAAAGGGCTTCCAGTAAGACTGGGGGAAGTAGATTGCCCATTCTACATGAAAACTGGAAGTTGCAAGTATGGTGCCACTTGCCGCTACAATCATCCTGACAGGGCTGCAATTACTCCACCTATTGCTGCATTAGGTCCCTCTATTTTGACATCTGCAGCTGCTAATCTGAGTGTTGGAGTTATGAATCCAGCTGTACCTGTTTATCAAACTTTTGATCCAAGGTTTTCAAATCCAATGTCACAGGTGGGAGTGGCAGAAATTATCTATCCTCAGCGTCCTGGACAGATTGAATGTGATTACTATATGAAAACTGGGGAGTGTAAATATGGGGAAAAATGCAAGTTCCACCACCCTATTGATCGCTCAACACCATCACTGTCAACCAAGGCCCCACAACAAACTGTCAAGCTCACTCCTGCAGGGTTACCTAGGAGAGAGGGTGTTGCCATCTGTCCGTATTATATGAAAACTGGCACCTGCAAGTTTGGTGCAACCTGCAAATTTGACCACCCATCACCTGGAGAAGTTATGGAGATGGCAAAATCACAAGGAACAGCTGCAACTAATGGAGGGGAAACAAATGGCCTTGAAAAGGAATCTGGTTCCGCTCAGGAACAGCAGTGA | 1599 | 0.4884 | MENHMYSYSPTNYRLAAAAAARGASPARFRDPDTMFLSHHRSDAAAALRFPSSAADADIGPPGVPSRISSSAAAAAVIGPNSSSSAGHLLSQPSSWPAAIAAAAAAAAAANVGPAALDLKRSSETLYHPTILGIQNTIGQSEAWYSTNSLAKRPRYESGSNLPIYPQRPGEKDCAHYMLTRTCKFGDGCKFDHPIWVPEGGIPDWKEVPNIATSETLPERPGEPDCPYFLKTQRCKFGSRCKFNHPKVSSENADVSTLPERPSEPLCAFYVKTGRCKFGAACKFHHPKGIQIQMSDELSQTAELTKANSMMEGITDTQQPLLHNSKGLPVRLGEVDCPFYMKTGSCKYGATCRYNHPDRAAITPPIAALGPSILTSAAANLSVGVMNPAVPVYQTFDPRFSNPMSQVGVAEIIYPQRPGQIECDYYMKTGECKYGEKCKFHHPIDRSTPSLSTKAPQQTVKLTPAGLPRREGVAICPYYMKTGTCKFGATCKFDHPSPGEVMEMAKSQGTAATNGGETNGLEKESGSAQEQQ* | 533 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dod09g0793 | 532 | ProSiteProfiles | Zinc finger C3H1-type profile. | 220 | 248 | IPR000571 | GO:0046872 | |
| Dod09g0793 | 532 | Gene3D | - | 259 | 365 | - | - | |
| Dod09g0793 | 532 | SUPERFAMILY | CCCH zinc finger | 335 | 358 | IPR036855 | GO:0046872 | |
| Dod09g0793 | 532 | SUPERFAMILY | CCCH zinc finger | 418 | 446 | IPR036855 | GO:0046872 | |
| Dod09g0793 | 532 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 37 | 113 | 510 | - | - | |
| Dod09g0793 | 532 | SUPERFAMILY | CCCH zinc finger | 169 | 195 | IPR036855 | GO:0046872 | |
| Dod09g0793 | 532 | ProSiteProfiles | Zinc finger C3H1-type profile. | 261 | 289 | IPR000571 | GO:0046872 | |
| Dod09g0793 | 532 | MobiDBLite | consensus disorder prediction | 507 | 532 | - | - | |
| Dod09g0793 | 532 | MobiDBLite | consensus disorder prediction | 504 | 532 | - | - | |
| Dod09g0793 | 532 | Gene3D | - | 167 | 258 | - | - | |
| Dod09g0793 | 532 | Gene3D | - | 416 | 512 | - | - | |
| Dod09g0793 | 532 | ProSiteProfiles | Zinc finger C3H1-type profile. | 470 | 498 | IPR000571 | GO:0046872 | |
| Dod09g0793 | 532 | ProSiteProfiles | Zinc finger C3H1-type profile. | 331 | 359 | IPR000571 | GO:0046872 | |
| Dod09g0793 | 532 | SUPERFAMILY | CCCH zinc finger | 225 | 246 | IPR036855 | GO:0046872 | |
| Dod09g0793 | 532 | SUPERFAMILY | CCCH zinc finger | 264 | 288 | IPR036855 | GO:0046872 | |
| Dod09g0793 | 532 | PANTHER | CCCH ZINC FINGER/TIS11-RELATED | 113 | 510 | IPR045877 | GO:0003729 | |
| Dod09g0793 | 532 | ProSiteProfiles | Zinc finger C3H1-type profile. | 417 | 445 | IPR000571 | GO:0046872 | |
| Dod09g0793 | 532 | SUPERFAMILY | CCCH zinc finger | 473 | 497 | IPR036855 | GO:0046872 | |
| Dod09g0793 | 532 | ProSiteProfiles | Zinc finger C3H1-type profile. | 168 | 196 | IPR000571 | GO:0046872 | |
| Dod09g0793 | 532 | SMART | c3hfinal6 | 261 | 288 | IPR000571 | GO:0046872 | |
| Dod09g0793 | 532 | SMART | c3hfinal6 | 417 | 444 | IPR000571 | GO:0046872 | |
| Dod09g0793 | 532 | SMART | c3hfinal6 | 220 | 247 | IPR000571 | GO:0046872 | |
| Dod09g0793 | 532 | SMART | c3hfinal6 | 331 | 358 | IPR000571 | GO:0046872 | |
| Dod09g0793 | 532 | SMART | c3hfinal6 | 168 | 195 | IPR000571 | GO:0046872 | |
| Dod09g0793 | 532 | SMART | c3hfinal6 | 470 | 497 | IPR000571 | GO:0046872 | |
| Dod09g0793 | 532 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 472 | 496 | IPR000571 | GO:0046872 | |
| Dod09g0793 | 532 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 264 | 288 | IPR000571 | GO:0046872 | |
| Dod09g0793 | 532 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 222 | 247 | IPR000571 | GO:0046872 | |
| Dod09g0793 | 532 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 334 | 357 | IPR000571 | GO:0046872 | |
| Dod09g0793 | 532 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 420 | 443 | IPR000571 | GO:0046872 | |
| Dod09g0793 | 532 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 170 | 194 | IPR000571 | GO:0046872 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dod09g0793 | Dod-Chr9 | 24871898 | 24893282 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dod09g0793 | 329 | 509 | C2H2 Transcription Factor Family | AT3G02830 | 35.165 | 8.34e-28 | 113 |
Transcription factors information