Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0790 ATGACCCAGCCGTCGGTGCCCCAGCCGCCGCTGGCGCCACCGCCATCGCCACCTCCGCCGCAGCCGCCGATCCCCCCGCCTCCCCAGCCCTCCGAGAGCGTCCGGGTGCGCTGCGCCGGCTGTCGCATGATCCTGACGGTGGCCCCCGGCCTGACCGAGTTCGCTTGCCCTAGCTGCCGTATGCCGCAGATGCTTCCTCCAGAGCTCATGGGTAGGGCCCACCAGGCGGCGCCGACTCCGACGCCGACGCCGCAACCGTTGCATCCGCTGCTGCCTGCTCCTCCGTCTTCACAGTCTCAGCCGCCGCACGTGCCCGCCCACGGCATTGATCCGACCAAGATCCAGCTTCCCTGCGCTTCCTGCAAGGCCATCCTCAACGTCCCTCACGGCCTCTCGCGCTTCGCTTGTCCGCAATGTAGGGTTGACCTTGCCGTCGACGTTTCCAAGGTCAAGCAGTTCTTCCCTTCCTTGCCGCCTCCGATTCCTCCCGAAGAAGTCAATGAGGTAGCTGTTGAAGTGGAGCGGGATGAGGATGAAGGAGGCATGCTTGGAGAAACATTTACAGATTATCGACCACCAAAAGTATCTATTGGACCTCAGCATCCAGATCCTGTCGTGGAGACATCTTCCTTGTCTGCAGTGCAGCCACCTGAGCCTATGTATAATCCAAAAGTAAAAGATAGTTTGGAAAGTTCAAAGGCTTTGTCATGCTTGCAAATTGAGACATTGGTCTATGCTTGCCAGAGACACATTCAACACCTCCCCAGTGGTGCCAGGGCAGGATTTTTTATTGGAGATGGAGCTGGTATAGGTAAAGGTCGAACGATCGCGGGGCTAATATGGGAGAATTGGCACCATGGAAGGAGAAAAGCATTGTGGATTTCTGTTGGTTCAGACTTGAAGTTTGATGCCAGAAGAGACTTGGATGATGTGGAAGCTACATGCATTGATGTGCATGCTTTGAACAAACTGCCTTATTCTAAGCTTGATTCAAAGTCTGTTGGGGTCAGGGAGGGAGTTGTTTTCTTGACATACAATAGTCTCATAGCATCTTCTGAGAAAGGTCGATCTCGTCTCCAACAGCTTGTGCAGTGGTGTGGACCAGGGTTTGATGGTCTTGTAATTTTTGATGAGTGTCACAAAGCAAAAAATTTGGTCCCGGAATCTGGTAGTCAGCCAACACGAACTGGAGAAGCAGTGCTTGAAATTCAGGATCGTCTGCCTGAAGCTCGTGTTGTTTATTGCTCTGCTACTGGTGCATCTGAGCCTCGCAATATGGGTTATATGGTTAGACTTGGTCTTTGGGGAGCTGGGACATCTTTCTCTGATTTTCGTGAATTTCTAGGTGCTCTTGACAGAGGGGGTGTTGGAGCTCTAGAATTAGTTGCCATGGACATGAAAGCAAGGGGGATGTATTTATGTCGAACACTTAGCTACAAGGGTTCTGAGTTTGAAGTTATTGAAGCACCACTAGAAGATGAAATGATGGATATGTATAAAAGGTCAGCAGAATTTTGGGCAGAATTACGAGTAGAATTGCTGTCGGCAAGTGCCTTCCTAAATGAAAAACCTAATTCTAGTCAGCTCTGGAGATTATATTGGGCAAGCCACCAGCGTTTCTTTAGACACATGTGTATGTCTGCAAAAGTCCCTGCTACTGTGAGACTAGCAAAGCAAGCTTTAAGTGAGGATAAGTGTGCAGTCATTGGTCTTCAGAGTACAGGAGAAGCAAGGACTGAGGAAGCTGTAACAAGATATGGTTCTGAACTTGATGACTTTGTTTCCGGACCTCGAGAATTGTTGCTTAAGTTTGTGGAAGAAAATTACCCACTACCTGAAAAACCTGAACTTCTTCCAGGGGAGGATGGTGTAAAGGAGCTCCAAAGGAAGAGGCACTTGGCAACTCCAGGAGTTTCAGTGAAAGGAAGGGTCAGAAAAGTAGCCAAGTGGCAACCTCCTAGTGATGCTGAAAGTGATGAAGAATCTGAAACTGACTCAGCTATTGAATCTACGGACTCGGATGATGAGTTTCAGATATGTGAAATTTGCACCACAGAGGAGGAAAAGAAAAAATTGCTACAATGTTCCTGCTGTGGTAAATTAGTCCATCCAGCTTGCTTGATGCCACCAATTGGTGATGTAGTACCTGAAGCGTGGTCATGCCATTTGTGCAAGGAAAAAACAGATGAATATCTTATAGCAAGACAAGCTTACATAACTGAACTCCAGAAGAGGTATGATGCTGCCTTGGAACGCAAGACAAAAATATTAGAGATAATCCGTTCTTTGGATCTTCCAAATAACCCCTTGGATGATATTATTGACCAGTTAGGAGGCCCTGACAAAGTAGCAGAAATGACAGGAAGGAGAGGCATGCTTGTGAGGGCCTCTACTGGGAAGGGTGTAACTTACCAGGCTCGTAATACAAAGGATGTCACTATGGAAATGGTTAACATGCATGAAAAGCAGCTATTTATGGACGGAAAGAAGTTAGTTGCTATTATCTCTGAAGCTGGATCAGCTGGTGTTTCTTTGCAGGCAGATAGAAGAGCCACAAATCAGAAAAGAAGGGTTCATTTAACTTTGGAACTTCCATGGAGTGCTGATCGAGCAATTCAGCAGTTTGGAAGAACTCATCGATCAAATCAAGCTTCAGCACCAGAATACAGGCTACTCTTTACTAACCTGGGTGGTGAACGGAGATTTGCATCAATTGTTGCTAAGAGATTAGAATCTCTTGGTGCTTTGACCCAAGGGGACCGCAGGGCTGGACCTACGTTAAGTGCTTATAACTATGATAGTGCTTACGGAAAGAGGGCTCTGGTGATTATGTACAAGGGAATAATGGAGCAGGATTCTCTGCCAGTTGTACCTCCGGGATGTTCGTCTGACAGGCCAGAAACTATTCAAGACTTCATTAATCAGGCAAAAGCTGCTCTTGTATCTGTTGGAATAGTTAGGGACACAACTCTTGGTAATGGTAAAGAGCTTGGAAGGTTATCCGGTCGCATTATTGATTCAGATATGCACGACGTTGGACGGTTTCTCAACCGGCTTTTGGGACTACCTCCCGAGATTCAGAATAAGATGTTTGAGTTATTTGTGAGTATCTTGGATCTTCTTGTTCAGAATGCTCGCATTGAAGGTAACCTTGACACAGGCATTGTTGACCTGAAAGCCAATGTCATTGAACTACAAGGGACTCCAAAGACTGTTCACGTTGATCAAATGACTGGGGCTTCAACGGTTCTGTTTACATTCATCTTGGATCGAGGAATCACATGGGAGTCGGCAAGTAGCATGCTGAATGAAAAGCAGAAGGATGGGCTTGGTTCAGCCAATGATGGCTTTTATGAGTCCAAGAGGGAGTGGTTGGGAAAACGGCATTTCATTTTAGCATTTGAAAGTTCTGCTGCTTCGGGTATGTTCAAAATAGTTCGCCCCGCTGTTGGAGAATCAATTCGGGAGATGCCCCTGTCTGAATTGAAAAGTAAATATAGAAAAATTTCATCCATAGAGAAGGCTCAAATTGGTTGGGAAGAAGAATATCAAGTTTCATCTAAACAGTGCATGCATGGTCCCAATTGTAAGATAGGAAATTTCTGTACAGTTGGCAGAAGATTGCAGGAAGTAAATGTCTTGGGCGGCCTCATTCTTCCTGTTTGGGGTACCATAGAAAAGGCCCTTTCTAAGCAGTCCCGCCTAAGCCATAGGAGGCTACGCGTTGTACGCATTGAAACTACTGTGGATAACCAGCGTATTGTCGGGCTTCTGGTTCCTAATGCAGCAGTTGAAACTGTTCTTCAAGATTTAGCATGGGTGCAAGAAATTGATGATTAA 3840 0.4682 MTQPSVPQPPLAPPPSPPPPQPPIPPPPQPSESVRVRCAGCRMILTVAPGLTEFACPSCRMPQMLPPELMGRAHQAAPTPTPTPQPLHPLLPAPPSSQSQPPHVPAHGIDPTKIQLPCASCKAILNVPHGLSRFACPQCRVDLAVDVSKVKQFFPSLPPPIPPEEVNEVAVEVERDEDEGGMLGETFTDYRPPKVSIGPQHPDPVVETSSLSAVQPPEPMYNPKVKDSLESSKALSCLQIETLVYACQRHIQHLPSGARAGFFIGDGAGIGKGRTIAGLIWENWHHGRRKALWISVGSDLKFDARRDLDDVEATCIDVHALNKLPYSKLDSKSVGVREGVVFLTYNSLIASSEKGRSRLQQLVQWCGPGFDGLVIFDECHKAKNLVPESGSQPTRTGEAVLEIQDRLPEARVVYCSATGASEPRNMGYMVRLGLWGAGTSFSDFREFLGALDRGGVGALELVAMDMKARGMYLCRTLSYKGSEFEVIEAPLEDEMMDMYKRSAEFWAELRVELLSASAFLNEKPNSSQLWRLYWASHQRFFRHMCMSAKVPATVRLAKQALSEDKCAVIGLQSTGEARTEEAVTRYGSELDDFVSGPRELLLKFVEENYPLPEKPELLPGEDGVKELQRKRHLATPGVSVKGRVRKVAKWQPPSDAESDEESETDSAIESTDSDDEFQICEICTTEEEKKKLLQCSCCGKLVHPACLMPPIGDVVPEAWSCHLCKEKTDEYLIARQAYITELQKRYDAALERKTKILEIIRSLDLPNNPLDDIIDQLGGPDKVAEMTGRRGMLVRASTGKGVTYQARNTKDVTMEMVNMHEKQLFMDGKKLVAIISEAGSAGVSLQADRRATNQKRRVHLTLELPWSADRAIQQFGRTHRSNQASAPEYRLLFTNLGGERRFASIVAKRLESLGALTQGDRRAGPTLSAYNYDSAYGKRALVIMYKGIMEQDSLPVVPPGCSSDRPETIQDFINQAKAALVSVGIVRDTTLGNGKELGRLSGRIIDSDMHDVGRFLNRLLGLPPEIQNKMFELFVSILDLLVQNARIEGNLDTGIVDLKANVIELQGTPKTVHVDQMTGASTVLFTFILDRGITWESASSMLNEKQKDGLGSANDGFYESKREWLGKRHFILAFESSAASGMFKIVRPAVGESIREMPLSELKSKYRKISSIEKAQIGWEEEYQVSSKQCMHGPNCKIGNFCTVGRRLQEVNVLGGLILPVWGTIEKALSKQSRLSHRRLRVVRIETTVDNQRIVGLLVPNAAVETVLQDLAWVQEIDD* 1280
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0790 1279 MobiDBLite consensus disorder prediction 197 218 - -
Dod09g0790 1279 MobiDBLite consensus disorder prediction 657 672 - -
Dod09g0790 1279 PANTHER STRAWBERRY NOTCH-RELATED 31 1279 IPR026741 GO:0006355
Dod09g0790 1279 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 823 928 IPR027417 -
Dod09g0790 1279 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 630 737 IPR013083 -
Dod09g0790 1279 MobiDBLite consensus disorder prediction 644 672 - -
Dod09g0790 1279 Pfam C-terminal domain on Strawberry notch homologue 768 1057 IPR026937 -
Dod09g0790 1279 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 209 443 IPR027417 -
Dod09g0790 1279 PANTHER OS08G0223700 PROTEIN 31 1279 - -
Dod09g0790 1279 MobiDBLite consensus disorder prediction 72 109 - -
Dod09g0790 1279 SUPERFAMILY FYVE/PHD zinc finger 671 729 IPR011011 -
Dod09g0790 1279 Gene3D - 229 430 IPR027417 -
Dod09g0790 1279 SMART PHD_3 679 725 IPR001965 -
Dod09g0790 1279 MobiDBLite consensus disorder prediction 1 32 - -
Dod09g0790 1279 ProSitePatterns Zinc finger PHD-type signature. 680 724 IPR019786 -
Dod09g0790 1279 ProSiteProfiles Zinc finger PHD-type profile. 677 727 IPR019787 -
Dod09g0790 1279 Pfam P-loop containing NTP hydrolase pore-1 200 500 IPR039187 -
Dod09g0790 1279 MobiDBLite consensus disorder prediction 79 101 - -
Dod09g0790 1279 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Dod09g0790 Dod-Chr9 24595574 24667014 Dispersed
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Dod09g0790 AAA_34 1.2e-131 CL0023