Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0754 ATGGATCTGATCGTCCCACACAGGCCAAACGCAGTTCTTGTTCGCTCGTTACCACCCGTCGCAACCTCTCTGAAGCCCAACCTCTTCGCGCTAACTACCCCACACAGCTCCAAAACCCTCCGCAGAAAGCTCAAGTTCCGAGCATCGGCTTCCGCAGGCCCCGGTGGCGCGGATGGTTCTTCTTGGTCCGACATTTCCCGATCGTTTCGGAAGGGTTCGAGGCGGTTTTGGGTGAAATTTGGGGAGCTGGTGAAGAAGGAGACGGGTTTTGACTTGGAAGACGGTAGTGCGAAGGTTGGTGAGTTCGCCGGTCGTGTTAGGGATGGTTTCGAGATGAGTGGAGATGAATTGGGGAGGTCTGGGACTCATTGGGTATCCGAGTTTGCTGATTGGAATCGGTGGGAACGTTGGAAGAATCTCAAGAACTGGGATCCTAAGCGAATTGGTGCACTAGTTCTTTATATCTTTGTAGTGGCATTTTCTTGTAAAGGAATATTTGTATTGATTCAAGCACCTTACCTTAATCGCCAAAGAAAAGAATTGACAGAAGCTTACATGGAAGCATTAATTCCTGACCCTTCCCCAAGTAACATTAGAAGATTTAAGAAGGGTATATGGAAGAAGACAATGCCAAAGGGCTTGAAAATGAAAAAGTTTGTTGAACAACTTGATGGAACCCTTGTTCATGATAATTCTTATGTTGGAGAGGATGCATGGGAGGATGATCTGGAGGCTCCTGAGAAACATGTAAAACAAATTATAGAGGATGATGAAAGGTTAAACATAGAAGAGAAGAAAGGACTAACAAAAGGCTTGGGCATTTCAGGCAGAGTGCCAATTGAGGGCACATGGCGTGAGAGACTTCATAAATGGAAGGATGTCCTTAGAAAAGAACATCTTGTTGAGCAATTAGATTCCTTAAATAGCAAATATGTAGTTGAATTTGACATGAACGAGGTTGAAGCTAATCTTCGCAAGGATGTGGCAGCAAAGGTAACAGCCACTCAAGGATCTAGGGCTCTGTGGATAGCTAAGAGATGGTGGCAATATCGCCCTAAACTTCCTTACAGTTACTTTCTTCACAAACTCGATAGTTCTGAGGTTGCAGCAGTTGTCTTCACTGAAGACTTGAAAAGATTGTACGTGCAAATGAAAGAAGGTTTTCCATTTGAATTTGTTGTTGATATCCCTCTTGATCCTTATCTGTTTGAGATTATTACAAGTTCTGGAGTTGAAGTAGATCTGTATCAGAAGCAACAGATCCACTATTTTATGAAGGTTGTGATTGCTTTAGTACCTGGAATACTAATTCTCTGGCTTATAAGGGAATCTGCAATGCTTTTACACATCACTTCCAAGCGTTTTCTTTACAAAAAGTATAATCAGCTGTTTGATATGGCATATGCTGAAAACTTCATTCTGCCAGTTGGAGATGTTGGTGAAACAAAATCTATGTACAAGGAAGTTGTGTTAGGTGGTGACGTTTGGGATCTTCTTGACGAGTTAATGATCTATATGGGAAATCCTATGCAGTTCTATGAGAGAGATGTGCAGTTTGTGCGGGGTGTTCTACTTTCTGGACCCCCTGGAACAGGAAAAACACTCTTTGCCAGGACACTTGCAAAAGAAAGTGGATTGCCTTTTGTTTTTGCTTCTGGTGCTGAGTTCACAGATAGCGAAAAAAGTGGAGCAGCTAGGATCAATGAGATGTTTTCCATTGCTAGGAGAAATGCACCTTGTTTTGTATTTGTAGATGAAATAGATGCAATTGCTGGAAGACATGCTAGAAAGGATCCACGGAGACGTGCAACTTTTGAGGCTCTCATTGCACAGCTTGATGGGGAGAAGGAAAAAATAGGTGTCGACCGTCTATCCCTTAGACAAGCTGTCATATTCTTATGTGCCACAAATAGGCCAGATGAATTAGATCTTGAATTTGTTCGTCCTGGGCGTATTGATCGTCGTCTTCACATTGGTTTGCCTGATGACAAGCAGAGAGTACAAATTTTTGGTGTGCATAGTTCTGGAAAACAACTTGCAGAGGATGTGGATTTTGAAAAGCTTGTCTTCCGAACTGTTGGATTCTCAGGAGCAGATATAAGAAACCTCGTCAATGAAGCAGCAATAATGTCGGTGAGAAAAGGGCATTCCCAAATTTTCCTGCAAGACATTGTTGATGTATTAGATAAACAACTTCTTGAGGGTATGGGTGTTCTTCTCACGGAGGAAGAGCAACAGAAATGCGAAGAACGAGTATCTTTTGAAAAGAAGAGATTGCTTGCTGTTCATGAAGCTGGTCATGTTGTGTTAGCTCACTTATTTCCTCGGTTTGACTGGCATGCATTTTCACAGCTCCTGCCTGGTGGCAAGGAAACTGCAATATCTGTATTCTACCCTCGAGAAGATATGGTAGACCAAGGTTACACAACCTTCGGTTACATGATGATGCAAATGGTAGTGGCTCATGGTGGTCGATGTGCTGAACGTGTTGTATATGGTGATGATATAACTGATGGAGGCAGAGATGATCTAGAAAAGATAACCAAGATTGCTAGGGAGATGGTAATCAGCCCGCAAAATTCAAGGTTGGGTTTATTAGCTTTAACCAAAAGAGTTGGCTTAGTTGATCGACCAGACAGTCCAGATGGCGAGTTGATAAGATATCGGTGGGACGACCCTCAAGTAATTCCTGCTAATATGACCCTAGAGGTATCTGAGCTCTTTACACGGGAGTTGACAAGGTACATTGAAGCAACAGAAGAACTTGCAATGAATGCTTTGAGGGATAATAGGCACATACTGGACGTGGTTGCAAGGGAACTATTGGAAAGGTCAAGAATAACTGGATTGGAGGTGGAAGAAAAATTGAAGGAGTTGTCTCCGGTACTGTTTGAGGACTTTGTGAGGCCATTCCAGATAAACATAGATGAGGAGGGACCGTTTACTCATAATGATCGCGTGCGATATCAGTCACCGGACTTATATCCTGCCCCTCTCCATAGATGTTGA 3009 0.4304 MDLIVPHRPNAVLVRSLPPVATSLKPNLFALTTPHSSKTLRRKLKFRASASAGPGGADGSSWSDISRSFRKGSRRFWVKFGELVKKETGFDLEDGSAKVGEFAGRVRDGFEMSGDELGRSGTHWVSEFADWNRWERWKNLKNWDPKRIGALVLYIFVVAFSCKGIFVLIQAPYLNRQRKELTEAYMEALIPDPSPSNIRRFKKGIWKKTMPKGLKMKKFVEQLDGTLVHDNSYVGEDAWEDDLEAPEKHVKQIIEDDERLNIEEKKGLTKGLGISGRVPIEGTWRERLHKWKDVLRKEHLVEQLDSLNSKYVVEFDMNEVEANLRKDVAAKVTATQGSRALWIAKRWWQYRPKLPYSYFLHKLDSSEVAAVVFTEDLKRLYVQMKEGFPFEFVVDIPLDPYLFEIITSSGVEVDLYQKQQIHYFMKVVIALVPGILILWLIRESAMLLHITSKRFLYKKYNQLFDMAYAENFILPVGDVGETKSMYKEVVLGGDVWDLLDELMIYMGNPMQFYERDVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARINEMFSIARRNAPCFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGEKEKIGVDRLSLRQAVIFLCATNRPDELDLEFVRPGRIDRRLHIGLPDDKQRVQIFGVHSSGKQLAEDVDFEKLVFRTVGFSGADIRNLVNEAAIMSVRKGHSQIFLQDIVDVLDKQLLEGMGVLLTEEEQQKCEERVSFEKKRLLAVHEAGHVVLAHLFPRFDWHAFSQLLPGGKETAISVFYPREDMVDQGYTTFGYMMMQMVVAHGGRCAERVVYGDDITDGGRDDLEKITKIAREMVISPQNSRLGLLALTKRVGLVDRPDSPDGELIRYRWDDPQVIPANMTLEVSELFTRELTRYIEATEELAMNALRDNRHILDVVARELLERSRITGLEVEEKLKELSPVLFEDFVRPFQINIDEEGPFTHNDRVRYQSPDLYPAPLHRC* 1003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0754 1002 SMART AAA_5 519 662 IPR003593 -
Dod09g0754 1002 CDD AAA 521 660 - -
Dod09g0754 1002 SUPERFAMILY FtsH protease domain-like 754 965 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Dod09g0754 1002 Gene3D - 662 736 - -
Dod09g0754 1002 Gene3D Peptidase M41 745 960 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Dod09g0754 1002 Pfam ATPase family associated with various cellular activities (AAA) 523 659 IPR003959 GO:0005524|GO:0016887
Dod09g0754 1002 PANTHER ATP-DEPENDENT PROTEASE 21 1002 - -
Dod09g0754 1002 Gene3D - 349 426 - -
Dod09g0754 1002 Pfam Peptidase family M41 752 953 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Dod09g0754 1002 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 485 730 IPR027417 -
Dod09g0754 1002 Gene3D - 480 661 IPR027417 -
Dod09g0754 1002 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 12, CHLOROPLASTIC 21 1002 - -
Dod09g0754 1002 Pfam AAA+ lid domain 682 718 IPR041569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0754 Dod-Chr9 18454873 18501585 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g0754 486 880 Miscellaneous Gene Families AT5G53170 31.738 7.77e-54 200