Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0693 ATGAGCCCTCCAGCTGCTCCGAACATGGATGACGGCAAGCCTTCGGTTGCCACCATCGACAATGGCGATCAAGTCGACTGTCGATTCGCCCAATTTTGCAAGAATGAGCTAGTGTTGGATGAGAAAAGCTGCATAGAAGCAATGAATCTGTTTGCAGAAACGAAACATGTTCTGCTGGCAAATGCTTTATCAATGGGGAATGGAATGTCTGAAGAAGTGGAGCGGTATTGGTTTGCTTTTATTTTATACTCTATCAAGAGACTGGCTCAGAAAAATGAGGAGGGTGGGAAGGAAGAGTCTGATAACACTGGGCTTACCTTGTGCCGTATATTGAGAGCAGCTAAGCTAAACATTTCAGATTTTTTCAAAGAACTTCCTCAGTTTGTTGTTAAGGCTGGTCCAGTTTTAAGTAATTTGTATGGCTCAGATTGGGAGAGCAAGCTTGAGGCAAAGGAGATGCATGCCAATGCTATTCACCTAAAGATTCTTAGCAAGTACTATAAGCGTGTATTTGGAGAGTTCTTCATGTTAACTGATGCAAATGTTGAAAAGAACTCATCTGTAACTGTTCAGGCATCTGAGTACCATCGCTTTGGATGGTTACTTTTCTTGGCACTCCGTGTACATGCTTTCAGCCGTTTCAAAGACTTGGTGACTTGCACCAATGGTTTAATTTCGATCTTGGCCATCTTGATTATTCATGTCCCTGCTCGTTTTCGGAATTTCAACATTCATGACTCTTCTCGCTTTGTTAAGAAGAGCAACAAAGGTGTGGCTCTCCTTGCATCTCTTTGCAACATTTATAACAATTCAGAAGATGAGTTGAGGAAAACCATGGAGAAAGCCAATAATCTAATTGCAGAGATACTGAAGAAGGAGCCTTGTTCAGCATCCGAAAGCGAGACTGAAAACCTGGAGAATTTTGATCGAGATGGTTTGACTTATTTTAAAGATCTGATGGAGGAATCATCTCTACCTTCCAGTTTAAATATCTTAGAAAAAGATTATGATTACATGATTCGCGACAAGGGTGAGCTGGATGAGAGGTTGTTCATTAATGAGGATGACAGCTTGCTTGCTTCGGGAAGTTTGTCTGGAGGTTCTGTTTCTGCAAGTGGTGGAAAGAGGAAATTTGATTCAATGGCATCACCTGCAAAGGCTATTACAAGTCCTCTCTCGCCCCATCGCTCTCCTGCATCCCATGCTAATGGAATTCCAGGCAGTGCAAATTCAAAGATGGCAGCGACTCCTGTAAGCACAGCAATGACTACTGCAAAGTGGCTCCGCACTCACATTTCCCCACTTCCATCGAAGCCCTCACAAGAACTGGAGCGATTCTTGACATCATGTGACAGGGATGTTACCAGTGATGTGGTGCGCAGAGCACATATCATATTGCAGGCTATATTTCCTAGTAGTCCTCTTGGAGAAAGATGTGTAACTTGGAGCCTGCAAACTGCAAATCTGATGGACAATATTTGGGCAGAGCAGCGGAGATTGGAAGCCCTGAAGTTATACTACAGGGTATTGGAAGCAATGTGCAGAGCAGAAGCCCAAATACTTCATGCAACCAATTTAACATCGCTACTAACTAATGAGAGGTTCCATCGATGTATGCTTGCATGTTCTGCAGAATTAGTCCTGGCAACTCACAAGACTGTGACGATGCTGTTTCCTGCAGTACTGGAGAGGACTGGAATTACAGCTTTTGATCTTAGCAAGGTGATTGAAAGTTTCATTAGACATGAAGAATCTCTCCCAAGAGAATTGAGGCGACATCTGAATTCATTAGAAGAACGACTTCTGGAGAGCATGGTATGGGAAAAGGGCTCCTCGATGTATAATTCGTTGGCTGTTGCTAGACCTGCCCTAGCTGCAGAAATAAATCGTCTTGGGCTACAAGCTGAACCTATGCTATCGTTGGATGAAATTGCAATGCATATTAACTTCTCCTGTGGAGGGCTGCCTCCTGTGCCTTCCTTGCCTAAGCTTGAGACATCACCAACTCAGAATGGGGATACCAGATCACCAAAGCGACTCTGTACAGAATATCGAAATGTGTTAGTTGAACGAAATTCTTTTACTTCTCCAGTGAAAGAACGGCTTCTTCCCTACAGCAACCTTAAGTCGAAGCTACCCCCACCTCCTTTGCAGTCTGCATTTGCCAGTCCAACAAAACCAAATCCAGGAGGCGGAGGGGAAACCTGTGCAGAGACTGGGATCAACATTTTTTTTGGCAAGATCATTAAGTTGGGAGCAGTCAGAATAAGTGGCATGGTTGAAAGGCTACAGTTACAGTTATCTCAGCAGATAAGGGAGAATGTATACTGCCTTTTCCAGCAAATTCTAAATCAATTGACGCATCTCTTCTTCAACCGCCATATTGACCAAATCATTCTGTGTTGCTTCTATGGAGTTGCAAAGATTTCTCAACTTAGCCTAACTTTTAGGGAGATCATATACAACTATAGAAAACAGCCTCAGTGCAAACCACAAGTTTTTCGCAGTGTATTTGTTGATTGGTCATTGGCACGCCGTAATGGGCGAACAGGACAGGAGCATGTTGACATCATTACATTTTACAATGAAATATTCATTCCCTCTGTGAAGCCGCTGTTAGTTGAACTTGGGCCTGGAGGAACAACGATGAAAAACAACCGGATGCCTGAAGTTAATATTAAAAATGATGGCCATTCAGCCCAATGTCCTGGTTCTCCTAAAATATCTCCTTTCCCAAGTCTTCCGGATATGTCTCCAAAAAAGGTGTCTGCCACACACAATGTATATGTCTCTCCACTACGATCATCTAAGATGGATGCTCTAATATCGCAAAGCTCGAAAAGTTATTATGCATGTGTTGGGGAGAGCACCCATGCATATCAGAGCCCTTCAAAAGACCTTACTGCCATCAATAACCGTTTGAATGGGGGCAACCGGAAGGTCAGAGGTTCCCTCAATTTCGATGACCTGGATGTCGGCTTGGTTAGTGACTCGATGGTTGCAAACAGCCTCTATCTGCAGAATGGAAGTTGTGCATCGTCGTCAGGCGCACCATTGAAGACTGAGCAACCCGACTCTTAA 3081 0.4365 MSPPAAPNMDDGKPSVATIDNGDQVDCRFAQFCKNELVLDEKSCIEAMNLFAETKHVLLANALSMGNGMSEEVERYWFAFILYSIKRLAQKNEEGGKEESDNTGLTLCRILRAAKLNISDFFKELPQFVVKAGPVLSNLYGSDWESKLEAKEMHANAIHLKILSKYYKRVFGEFFMLTDANVEKNSSVTVQASEYHRFGWLLFLALRVHAFSRFKDLVTCTNGLISILAILIIHVPARFRNFNIHDSSRFVKKSNKGVALLASLCNIYNNSEDELRKTMEKANNLIAEILKKEPCSASESETENLENFDRDGLTYFKDLMEESSLPSSLNILEKDYDYMIRDKGELDERLFINEDDSLLASGSLSGGSVSASGGKRKFDSMASPAKAITSPLSPHRSPASHANGIPGSANSKMAATPVSTAMTTAKWLRTHISPLPSKPSQELERFLTSCDRDVTSDVVRRAHIILQAIFPSSPLGERCVTWSLQTANLMDNIWAEQRRLEALKLYYRVLEAMCRAEAQILHATNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLAVARPALAAEINRLGLQAEPMLSLDEIAMHINFSCGGLPPVPSLPKLETSPTQNGDTRSPKRLCTEYRNVLVERNSFTSPVKERLLPYSNLKSKLPPPPLQSAFASPTKPNPGGGGETCAETGINIFFGKIIKLGAVRISGMVERLQLQLSQQIRENVYCLFQQILNQLTHLFFNRHIDQIILCCFYGVAKISQLSLTFREIIYNYRKQPQCKPQVFRSVFVDWSLARRNGRTGQEHVDIITFYNEIFIPSVKPLLVELGPGGTTMKNNRMPEVNIKNDGHSAQCPGSPKISPFPSLPDMSPKKVSATHNVYVSPLRSSKMDALISQSSKSYYACVGESTHAYQSPSKDLTAINNRLNGGNRKVRGSLNFDDLDVGLVSDSMVANSLYLQNGSCASSSGAPLKTEQPDS* 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0693 1026 MobiDBLite consensus disorder prediction 393 411 - -
Dod09g0693 1026 Gene3D - 419 607 - -
Dod09g0693 1026 Coils Coil 268 292 - -
Dod09g0693 1026 SUPERFAMILY Cyclin-like 739 913 IPR036915 -
Dod09g0693 1026 PANTHER BNACNNG22930D PROTEIN 16 1013 - -
Dod09g0693 1026 SMART RB_A_2 416 617 IPR002720 GO:0005634|GO:0051726
Dod09g0693 1026 Pfam Domain of unknown function (DUF3452) 100 234 IPR024599 -
Dod09g0693 1026 SMART DUF3452_2 86 234 IPR024599 -
Dod09g0693 1026 Pfam Retinoblastoma-associated protein B domain 741 870 IPR002719 GO:0005634|GO:0051726
Dod09g0693 1026 Pfam Retinoblastoma-associated protein A domain 416 617 IPR002720 GO:0005634|GO:0051726
Dod09g0693 1026 Gene3D - 700 895 - -
Dod09g0693 1026 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 16 1013 IPR028309 GO:0006357|GO:0051726
Dod09g0693 1026 Gene3D - 195 353 - -
Dod09g0693 1026 MobiDBLite consensus disorder prediction 386 411 - -
Dod09g0693 1026 SUPERFAMILY Cyclin-like 424 619 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0693 Dod-Chr9 14367427 14375945 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Dod09g0693 RB_A 4.8e-64 CL0065