Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0643 ATGGACGCTAGCTCCGCCAACTCTTCCGCCATGGCTGTCTCATCCATCTTCGAATCAGGCGGCACTAAAGGTGGACGATTTTCTCCTAAGGCACACAAGAGGTTGAAATTATCATCTGATGGCCCACCATTTGCAAACGTTGTAGATTACAGCAATCCATTTGCAATCTCCGATGTTCTGGATTATTTAGACAATGGAAGATTTGGAAGTGTCACAAAGGACATAGAGGCCCTTGTAGCCCGAAAAATGCAAATATTGAGCCCTTACTTTGCAAAATATCCCACACTGGTTAATCAATTATTGAAAGTGGTAACAAACAATGATGAAGAAGCTCCTAAGTTGGAAATTGAAGAAGTTACAGGAGCACATGAAAATGTGATAGATTTGGAGGGAGGGCGCATTGAAAAGGATGGTCCTGCATCTGTTGTGATCATTGACTCAGATGATGAAGATGATAGAGACCCAAAATCTGATTTTCTATTTCATGAAGTTGTGTTACCGATGCAAGTTAGACCATCTCCTGCCTTAAAGATGATTGAATACCATGCTAACCTCGCGTACCAAGGAGAAAGTGATAATCTAAAAGTTGAAATTGGGACAAGTCTGAATGATAAAAGTAACATTCCCAGAGACAAAGGTGTTTATGTTGGTGTACAGGAGGAAGATGAGGTTGATACCAAAGATGATGGCCTAGGCGATATTTGGAGGGAGATGTCAATGGCAATTGAATGTTCCAAAGATGTTTCTGTGATTCCTGTGCCTGAAGAAGAAGTGGAAGAAGAGGAGGACTGTGATCATTCTTTTGTTTTAAAAGATGATCTTGGTTATGTTTGCCGTGTTTGTGGGGTTATTGACAAGAAAATCGAAACTATATTTGAGTTCCAATACAAGGTTAAAAGGAGTACAAGAACATACATGCATGATTCATGGAATGCTAAAGAAAAAGCAGATGTATTTGGAATTAAGATTGCTGAAGATGATCTCATGTTAACCGAAATCGCTGCACACCCAAGGCATATGAAGCAAATGAAACCTCATCAAGTGGAGGGATTTAATTTTCTTGTCAGAAACCTTGCTGGTGACCAGCCTGGGGGCTGCATCTTGGCTCATGCTCCAGGATCTGGGAAAACTTTCATGATAATAAGTTTCATGCAAAGTTTTCTAGGGAAGTATTCTAATGCTAGACCTCTAGTGGTGCTTCCTAAGGGAATACTGTCAACATGGAAGAAGGAGTTTCAGACATGGCAAGTGGAGGACATACCACTTCTTGACTTTTACACTGTGAAGGCAGACAGTAGATCCCAGCAACTGGAAGTGTTGAAGAAGTGGGTGCAGCAGAAGAGTATCCTTTTCTTAGGATACAAACAGTTCTCCTCAATTGTTTGTGATAATGGAGCCAACCAAACATCAATAGATTGCCAGGAGATATTGCTCAAGGTTCCTTCAATTCTCATTTTAGATGAGGGGCACACTCCAAGGAATGAAAATACAGATATGGTACAGTCCCTTGCCAAAGTTAAAACGCCTCGAAAGGTTGTACTGTCAGGAACTCTGTATCAGAATCATGTCAAGGAGGTATTTAACATCCTGAATCTTGTTCGGCCAAAGTTTTTGAAGATGGAAACATCAAGGCCTATTGTCAAGCGCATTCATAGCAGAATACACATACCTGGTGTTAGAAGCTTCTATGATTTGGTTGAGAACACTCTGCAGAAGGATACGGATTTTAAAAGGAAAGTGGCTGTCATACAAGATTTGCGGGAGATGACAAGCAAGGTTCTTCATTATTATAAGGGAGATTTTCTTGATGAGCTTCCTGGTCTAGTTGATTTCACAGTTGTACTGAAACTTACACCTAGACAGAAGCATGAAGCTGAGAGATTGAAGAAGCAGCTATCCAGGAAGTTTAAGATATGTTCTGTTGGCAGTGCTGTCTATCTTCACCCTAAGTTAAAACCTATTGCTGAACAATGTGGTGAAAACTCTATTTCTGATAATAAAATGGACGAATTGATTGATAAACTAGATGTCAGAGATGGTGTCAAGTCAAAATTCTTCCGCAACATTCTAAACCTATGTGAGTCAGCTGGGGAGAGGCTTCTGGTTTTCAGCCAATATCTCTTACCTCTGAAATATTTGGAAAGGTTGGTTATGAAATGGAAGGGATGGAGTCATGGCAGAGAAATCTTTGTCATCTCTGGAGAATCAAGCTCTGAACATCGGGAATGGTCCATGGAAAAATTCAACACCTCACCTGATGCTAAAGTGTTCTTTGGCTCGATCAAGGCATGTGGAGAGGGCATATCATTGGTTGGGGCATCCCGCATAATTATTTTGGATGTCCATCTCAACCCATCAGTGACTCGCCAAGCCATTGGCCGTGCATTCCGGCCTGGCCAGACTAAAAAAGTCTATGTATATCGGTTGGTGGCGGCTGATTCACCCGAAGAGGAAGACCACAGTACTTGCTTCAAGAAGGAGTTGATTTCAAAAATGTGGTTTGAATGGAATGAGTATTGTGGTGATCGAGCCTTTGAAGTGGAGACAGTTCCTGTTAGAGAATGTGGGGATCTCTTCCTTGAAACTCCTTCGTTTGGGGAAGATATAAAAGCTCTGTATAGAAGGTAG 2628 0.4136 MDASSANSSAMAVSSIFESGGTKGGRFSPKAHKRLKLSSDGPPFANVVDYSNPFAISDVLDYLDNGRFGSVTKDIEALVARKMQILSPYFAKYPTLVNQLLKVVTNNDEEAPKLEIEEVTGAHENVIDLEGGRIEKDGPASVVIIDSDDEDDRDPKSDFLFHEVVLPMQVRPSPALKMIEYHANLAYQGESDNLKVEIGTSLNDKSNIPRDKGVYVGVQEEDEVDTKDDGLGDIWREMSMAIECSKDVSVIPVPEEEVEEEEDCDHSFVLKDDLGYVCRVCGVIDKKIETIFEFQYKVKRSTRTYMHDSWNAKEKADVFGIKIAEDDLMLTEIAAHPRHMKQMKPHQVEGFNFLVRNLAGDQPGGCILAHAPGSGKTFMIISFMQSFLGKYSNARPLVVLPKGILSTWKKEFQTWQVEDIPLLDFYTVKADSRSQQLEVLKKWVQQKSILFLGYKQFSSIVCDNGANQTSIDCQEILLKVPSILILDEGHTPRNENTDMVQSLAKVKTPRKVVLSGTLYQNHVKEVFNILNLVRPKFLKMETSRPIVKRIHSRIHIPGVRSFYDLVENTLQKDTDFKRKVAVIQDLREMTSKVLHYYKGDFLDELPGLVDFTVVLKLTPRQKHEAERLKKQLSRKFKICSVGSAVYLHPKLKPIAEQCGENSISDNKMDELIDKLDVRDGVKSKFFRNILNLCESAGERLLVFSQYLLPLKYLERLVMKWKGWSHGREIFVISGESSSEHREWSMEKFNTSPDAKVFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQTKKVYVYRLVAADSPEEEDHSTCFKKELISKMWFEWNEYCGDRAFEVETVPVRECGDLFLETPSFGEDIKALYRR* 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0643 875 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 329 558 IPR027417 -
Dod09g0643 875 Pfam Helicase conserved C-terminal domain 688 798 IPR001650 -
Dod09g0643 875 Pfam SNF2-related domain 362 623 IPR000330 GO:0005524|GO:0140658
Dod09g0643 875 SMART ultradead3 339 553 IPR014001 -
Dod09g0643 875 PANTHER PROTEIN CHROMATIN REMODELING 35 43 875 - -
Dod09g0643 875 CDD SF2_C_SNF 673 810 - -
Dod09g0643 875 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 357 536 IPR014001 -
Dod09g0643 875 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 43 875 IPR044567 GO:0080188
Dod09g0643 875 SMART helicmild6 711 799 IPR001650 -
Dod09g0643 875 Gene3D - 310 555 IPR038718 -
Dod09g0643 875 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 685 848 IPR001650 -
Dod09g0643 875 Gene3D - 606 852 IPR027417 -
Dod09g0643 875 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 482 837 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0643 Dod-Chr9 11573773 11580938 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Dod09g0643 SNF2_N 1.6e-21 CL0023