Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0638 ATGCCAGGGAAACCTGAAACTGAGCAGATTCAGTTTCAATCTTCCATTTACTCTCAGCCTTGGTGGCGTGGTGTGGGGGAAAATGCCTCCAAATCATCATCAGCGGATCAGCTAAATGGTTCAGTCATGAATGGTGTCACAGTCACACAATCAGAGACCAATGAAGGGCTGGCTAATGGTGTTGATATCAATAAACAAAGGCAGCCTATGGTTTCTTCTTCACTATCTGGAATAGATAAGTCAGGTGGGGATGTTATGAAAGAAAACCAAAACATCAAACATGGTTTGTCCTCAACCCCATTTACCATGGGCAAACCCCTTGGTCCAGATTCTCAGATGGATGTTGGTCATTCAATTGTTTTAACATCTCATCCTTATTTTGATGCACAGTATGGTGGAATTTTGACTACTTATGGGCAACAAACTATGATAAACCCTCAACTTTATGGAATGCATCATGCTAGAATGCCTTTGCCACTTGAAATGGAAGAGGAGCCTGTCTATGTCAATGCAAAGCAGTACCATGGTATTTTGAGGCGAAGACAGTCACGTGCTAAGGCTGAGCTTGAAAAGAAAGTGATTAAAGTTAGAAAGCCATATCTTCACGAATCCCGTCACCTTCATGCTATGAGAAGAGCAAGGGGTAATGGGGGTCGCTTTCTCAATACAAAGAAGCTTGAAGGCAACAATTCTAATTCCACTCCAGAAGAATGCAACAACAGCAGCTCAAACCCTTCAACAGTATCTGGCAGCTTGCCTGCCACTGCACATTTACATGCCAACAATAATCGGCATGATGCATTGCAGTCCATGGGTCAGAGCATGCAAAAAGTGCAGGGTTTCACCATTGGTTACCATGATGGCAATGGCCTGTCATCACTGTACCATTCACAGTCAAATGGAAAAAGTGAGGGACTGTGCTTTGGTGGACAGAGGCAAAGCATGCACATGCATGGAGCCCCAAATGGGGCTATTGAATAA 981 0.4383 MPGKPETEQIQFQSSIYSQPWWRGVGENASKSSSADQLNGSVMNGVTVTQSETNEGLANGVDINKQRQPMVSSSLSGIDKSGGDVMKENQNIKHGLSSTPFTMGKPLGPDSQMDVGHSIVLTSHPYFDAQYGGILTTYGQQTMINPQLYGMHHARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKVRKPYLHESRHLHAMRRARGNGGRFLNTKKLEGNNSNSTPEECNNSSSNPSTVSGSLPATAHLHANNNRHDALQSMGQSMQKVQGFTIGYHDGNGLSSLYHSQSNGKSEGLCFGGQRQSMHMHGAPNGAIE* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0638 326 MobiDBLite consensus disorder prediction 204 254 - -
Dod09g0638 326 MobiDBLite consensus disorder prediction 223 254 - -
Dod09g0638 326 PANTHER TRANSCRIPTION FACTOR Y SUBUNIT A-1, PUTATIVE-RELATED 17 325 - -
Dod09g0638 326 PRINTS CCAAT-binding transcription factor subunit B signature 166 188 IPR001289 GO:0003700|GO:0006355
Dod09g0638 326 PRINTS CCAAT-binding transcription factor subunit B signature 197 220 IPR001289 GO:0003700|GO:0006355
Dod09g0638 326 MobiDBLite consensus disorder prediction 305 326 - -
Dod09g0638 326 Gene3D - 163 224 - -
Dod09g0638 326 ProSiteProfiles NF-YA/HAP2 family profile. 163 223 IPR001289 GO:0003700|GO:0006355
Dod09g0638 326 SMART cbf3 162 223 IPR001289 GO:0003700|GO:0006355
Dod09g0638 326 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 165 220 IPR001289 GO:0003700|GO:0006355
Dod09g0638 326 ProSitePatterns NF-YA/HAP2 subunit signature. 168 188 IPR018362 GO:0003677|GO:0016602
Dod09g0638 326 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 17 325 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0638 Dod-Chr9 11372297 11378359 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Dod09g0638 CBFB_NFYA 2.8e-26 No_clan