Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0492 ATGGCGATGATGGCAAGTTCAAGAGAAGGTTATCAAGCAAAGCAAGAGGGTGATACTACAATTGATATTGACAAGTACTCCAAGTATATAGCTTGTACTTCAAGACAATGGTCGGCTTTCAGGAACCCAAGAATTGTGAGAGTGTCACGTTCCTTTGCAGGGAAAGACAGGCACAGCAAGGTTTGCACCATCAGGGGCCTTAGGGACCGCAGGATTAGGCTCTCAGTTCCCACAGCAGTTCAGTTGTATGATCTTCAGGACAAGCTTGGGCTAAGCCAGCCCAGCAAGGTCATAGATTGGCTTCTTGAGGCCACGAAACTTGACATTGACAAGCTCCCCCCACTTCAATTCCCTCAGGGGTTCTCTCAATTTCATCATCAACAAGCCCTATTGCCTCCCTCATCACACCAGCTTTCCCTTGGAGCCTTGTATGATGCCAATTCCACATTTATAAGAGATGGGGCACACCATCAAAATCTCATGGCAAGGTCATCAAGGTTTTGGGACTTGGATTCAATATCATCAAGAGCAAAAGGGAAAGAAGCAGCTGAAAGAGGGTATGTCTCTGAGAAGGGAAAGTGGATCATCAAAACAAATGAGCAAGAAGAGAATCTAGATGGTCGTGGTGTTGGAGGTTATGACCACAGTAGCCAGGTTTCAACTCAGAGGCTTTTCCCCATGGGGACTGCTACTACTACTACTACTCACCCTACTTTACATGATTTGCTAAACATTAACAATGCCATGCCATATAGCTCTTCTTACCCTTCGGAGCCTTCTAGCTTGTCTTTATCCCAATTTGGAAGCCATGGATTGTTTCCTTTCCAGCAGTTAGATCCACATCCAATCGGTGGCAATGGTGTGCAATTTGCATCTTCTCTGCAAGTACCATCTGGTTCTCAATTATTCTTTGGTCCATCTTCTGCTACACCACCACCACTTTTCAGTCCTTATGCTCCATTTGTGACCACATCATCAGTGGAAAATAATGATCCAGTTCCAAGGCAATTCAACCATATCCATCAGTTCTTGAACTCAAGCTCTCAAGTGTTGCCTCATTACATCCCTTCTCTTCATCACTCATTCAATTCACCTGTTAGACCCTTCCCAGCACCATTTAGTTCCAAGCTTCTTGAGTCAGACAACAACAACAACAACAACAATCGCAGCCAATCAGATTATAAGGGCAGCACTCGCTCTTGA 1203 0.4489 MAMMASSREGYQAKQEGDTTIDIDKYSKYIACTSRQWSAFRNPRIVRVSRSFAGKDRHSKVCTIRGLRDRRIRLSVPTAVQLYDLQDKLGLSQPSKVIDWLLEATKLDIDKLPPLQFPQGFSQFHHQQALLPPSSHQLSLGALYDANSTFIRDGAHHQNLMARSSRFWDLDSISSRAKGKEAAERGYVSEKGKWIIKTNEQEENLDGRGVGGYDHSSQVSTQRLFPMGTATTTTTHPTLHDLLNINNAMPYSSSYPSEPSSLSLSQFGSHGLFPFQQLDPHPIGGNGVQFASSLQVPSGSQLFFGPSSATPPPLFSPYAPFVTTSSVENNDPVPRQFNHIHQFLNSSSQVLPHYIPSLHHSFNSPVRPFPAPFSSKLLESDNNNNNNNRSQSDYKGSTRS* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0492 400 Pfam TCP family transcription factor 54 156 IPR017887 -
Dod09g0492 400 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 3 392 IPR005333 GO:0003700
Dod09g0492 400 MobiDBLite consensus disorder prediction 376 400 - -
Dod09g0492 400 MobiDBLite consensus disorder prediction 373 400 - -
Dod09g0492 400 ProSiteProfiles TCP domain profile. 54 112 IPR017887 -
Dod09g0492 400 PANTHER TRANSCRIPTION FACTOR TCP17 3 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0492 Dod-Chr9 7379530 7381509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g0492 1 325 TCP Transcription Factor Family AT5G60970 37.791 4.72e-50 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Dod09g0492 TCP 4.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0492 - - gmx:100804574 473.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1805 05 43465693 43467837 Dod09g0492 09 7379530 7381509 PCT