Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g2268 ATGGGAGTTCCGGCGTTTTACCGGTGGCTGGCGGAGAAGTATCCGATGGTGGTGATGGATGCGGTGGAGGAGGAGCCTGTGGTTATCGACGGAATCGGGATTCCGGTGGACACGAGCAAGAAGAACCCTAACAACATCGAATACGATAACCTCTACCTCGACATGAACGGAATCATTCACCCTTGCTTCCACCCTGACGATAGGCCATCTCCGACGTCGTTTGATGAGGTGTTTCAGTGCATGTTTGATTACATTGACAGGCTGTTTGTTATGGTACGGCCTAGGAAGCTGCTCTACATGGCCATTGATGGTGTTGCGCCGAGGGCTAAGATGAACCAGCAGCGGTCGAGGCGGTTTAGAGCAGCAAAAGATGCAGCTGAGGCGGCTGCTGAAGAAGCAAGGTTAAGGGAGGAATTTGAGAGGGAGGGCAGGAATCTTCCTCCCAAAGAAGAGTCCCAGACTTTCGATTCAAATGTCATTACGCCAGGAACTGAATTTATGGCTGTTTTATCAATTGCGCTTCAGTATTATATTCATCTTAGGTTGAACAATGACCCTGGTTGGCAGAATATTAAGGTTATTCTTTCTGATGCTAATGTTCCAGGCGAAGGGGAGCATAAGATTATGTCCTATATTCGCCTGCAGAGGAATCTTAAAGGTTTTGATCCAAATACACGACATTGCCTGTATGGTTTGGATGCTGATTTGATTATGTTGGCTTTGGCTACCCATGAAGTCCATTTTTCAATTCTTAGAGAGGTTGTCTTTACTCCTGGACAAGACAAATGCTTCGTCTGTGGTCAGATGGGTCATGTGGCTGCAGACTGTGAAGGAAGGGCAAAAAGGAAGGCAGGAGATTTTGATGAAAAAGGAGAAGCTGTTGTGGCTAAAAAGCCCTATCAGTTCCTTAACATTTGGACTCTGAGGGAATATCTGGAGTATGAGATGAGAATACCAAATCCTCCTTTTGAGATCGATTTTGAATGCATTGTGGATGATTTTATCTTCATGTGTTTCTTTGTTGGCAATGATTTCCTACCACATATGCCTACGCTGGAGATTCGAGAGGGTGCAATCAACTTGCTGTTGGCAGTATACAAGAAGGAGTTCCCCACATTGGGTGGTTATTTAACCAATGGAAGCAAGCCAAATTTGAGCAGAGTGGAGCACTTTATTCAAGCTGTTGGAGCTTATGAAGATAGCATATTCCAGAAAAGAGCACGGTTGCATCAGCGACAAGCAGAAAGAATAAAGCGGGAAAAGGCACAAGCAAGAAGAGGGGATGATTCCGAGCCTCAATTTCAACCAGAGTCTCTAGTTGCAGTGTCACGATTCCATGGTTCCCGTCTTGCTTCAGCTCCGACGCCTTCACCGTATCAACAATCCAAACGTCATGATCCCTGTGCGTCCACACCTCTTGGAAAAGACTATAAGCATGCCTCTGAGGGGCCTCCTCATAAAGTTGCTAGGATATCTTCAGGGGCAGCTGTTGCTGCTGCCATTGTTGAAGCTGAGAATAATCTTGAATTAGAATTTCAAGATAACAAAGATGACTTGAAAGCAAAACTGAAGGACATACTTCGTGAGAAATCTGATGTATTCAACTCAAAAAATGCTGAAGAGGACAAGATCAAATTGGGAGAACCAGGCTGGAAGGAGAGGTATTATGAGGAGAAATTTTCTGCCAAAACTCCTGAGGAACTTGAAATGATACGGAGAGATGTTGTCTTGAAATATACTGAAGGCCTATGTTGGGTGATGCACTATTACTACGAAGGTGTTTGTTCTTGGCAATGGTTTTATCCTTATCATTATGCTCCCTTTGCATCTGATCTCAAGGACCTTGGGAAGCTTGATATTAGCTTTACACTGGGTACCCCATTCAAACCATTTGATCAACTTCTAGGCGTTTTTCCTGCTGCAAGTTCACATGCACTACCTGAGCCGTATAGGAAGCTTATGATTGATCAAGACTCACCAATAATTGATTTTTATCCAATTGACTTTGAAGTGGACATGAATGGCAAACGGTATGCTTGGCAGGGTATTGCAAAGTTGCCTTTTATTGATGAAGCACGTCTTCTTGCAGAAGTCAAAAAAATTGAAAACTTGTTAACACCGGATGAAAAGCGGCGAAATGCAATGATGTTCGACCTGCTTTTTGTGAATTCCTGTCATCCACTTTCTGCATGTATAAGTACACTCGACAACAAATGTAGAAACATGTCCGACAGTGAACGGGTTGAGGTCAAAGAACAAATTGATCCCAAAGAAAGGGATACATGCAGTGGTGGAATGAATGGTTTTATATCCTTATGTGGTGGAGAACCTTGCCCTCCTATCTTCAGGTCTCCTGTTGAAGGCATGGAAGATATTATGGACAACCATGTCATATGTGCGATATACAGACTCCCTCATCCTCATGAACACATTACCCGACCACCACAAGGAGTTAAATTTCCAAAGAAGACTGTGACTATTGGGGATCTAAAACCTGCACCTGTTCTATGGCATGAAGATTCAGGTGGGAGACGTGGGGAAAATGGGAGGAGGAACCCTCAGGGATCCATTTATGGTCGGGATCTTGGAGAGGCAGCAAGGAGACTCGTTGTAAATTCCTTACAGGTGAAGGCGGACACCAATGGGTACCCCTATCCTATTAAGGGACCACCTACATCATATGTAGCACCAAGGGGTCATCCGCCATTGCCTTCCTATAATTATGGATCTCGCCCAGGATATGGTGCGATGCCGCCTCCAATGGCACCTCCTCCCTTCCAAGGCCAACAACAGTTTGTACCTTATCCCGCGGTCCCTACCCAACAGTATGGTTACAATCAACCATACCCTCCGCAGTCAACGTACAACCCTCCTCCTCGTCAATCAAATTCTGATAGAAGTAACCACCAACACTATAGATCACATCATTATGGAAGAAATAATCATGGCAGTGGGTTTATGAGGGTTGGATATGGACCATCAGGTAATAATCAGAATTCCAGGTATGTAAATAATCGAGGTTCATTTGCCGGTCATCACCACCAAGCTGGTCATCAGAGACAAGACTACCAACAATCTAGGATTCCTTACCAGAATTGGGCTCCACGGAATGACACAAATGGCCCCAGGGAATATGGCCACCATTCGGCCAATCAATATTCTCTATTGGACAGAAGGGGGGGAAATAGACAGCCAATGCCACCACCCGGTTACAGTCGCAGATAA 3225 0.449 MGVPAFYRWLAEKYPMVVMDAVEEEPVVIDGIGIPVDTSKKNPNNIEYDNLYLDMNGIIHPCFHPDDRPSPTSFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKDAAEAAAEEARLREEFEREGRNLPPKEESQTFDSNVITPGTEFMAVLSIALQYYIHLRLNNDPGWQNIKVILSDANVPGEGEHKIMSYIRLQRNLKGFDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQDKCFVCGQMGHVAADCEGRAKRKAGDFDEKGEAVVAKKPYQFLNIWTLREYLEYEMRIPNPPFEIDFECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLLAVYKKEFPTLGGYLTNGSKPNLSRVEHFIQAVGAYEDSIFQKRARLHQRQAERIKREKAQARRGDDSEPQFQPESLVAVSRFHGSRLASAPTPSPYQQSKRHDPCASTPLGKDYKHASEGPPHKVARISSGAAVAAAIVEAENNLELEFQDNKDDLKAKLKDILREKSDVFNSKNAEEDKIKLGEPGWKERYYEEKFSAKTPEELEMIRRDVVLKYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKDLGKLDISFTLGTPFKPFDQLLGVFPAASSHALPEPYRKLMIDQDSPIIDFYPIDFEVDMNGKRYAWQGIAKLPFIDEARLLAEVKKIENLLTPDEKRRNAMMFDLLFVNSCHPLSACISTLDNKCRNMSDSERVEVKEQIDPKERDTCSGGMNGFISLCGGEPCPPIFRSPVEGMEDIMDNHVICAIYRLPHPHEHITRPPQGVKFPKKTVTIGDLKPAPVLWHEDSGGRRGENGRRNPQGSIYGRDLGEAARRLVVNSLQVKADTNGYPYPIKGPPTSYVAPRGHPPLPSYNYGSRPGYGAMPPPMAPPPFQGQQQFVPYPAVPTQQYGYNQPYPPQSTYNPPPRQSNSDRSNHQHYRSHHYGRNNHGSGFMRVGYGPSGNNQNSRYVNNRGSFAGHHHQAGHQRQDYQQSRIPYQNWAPRNDTNGPREYGHHSANQYSLLDRRGGNRQPMPPPGYSRR* 1075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g2268 1074 Pfam Zinc knuckle 262 276 IPR001878 GO:0003676|GO:0008270
Dod08g2268 1074 PANTHER 5'->3' EXORIBONUCLEASE 1 878 IPR027073 -
Dod08g2268 1074 Coils Coil 407 427 - -
Dod08g2268 1074 MobiDBLite consensus disorder prediction 991 1006 - -
Dod08g2268 1074 Pfam Xrn1 helical domain 325 829 IPR041412 -
Dod08g2268 1074 SMART c2hcfinal6 262 278 IPR001878 GO:0003676|GO:0008270
Dod08g2268 1074 Coils Coil 122 142 - -
Dod08g2268 1074 PANTHER 5'-3' EXORIBONUCLEASE 1 878 - -
Dod08g2268 1074 MobiDBLite consensus disorder prediction 939 1074 - -
Dod08g2268 1074 CDD PIN_XRN1-2-like 51 312 - -
Dod08g2268 1074 ProSiteProfiles Zinc finger CCHC-type profile. 262 276 IPR001878 GO:0003676|GO:0008270
Dod08g2268 1074 Coils Coil 509 529 - -
Dod08g2268 1074 MobiDBLite consensus disorder prediction 416 437 - -
Dod08g2268 1074 PIRSF Exonuclease_Xrn2 1 1060 IPR017151 GO:0004534|GO:0005634|GO:0006139
Dod08g2268 1074 MobiDBLite consensus disorder prediction 416 432 - -
Dod08g2268 1074 MobiDBLite consensus disorder prediction 1021 1038 - -
Dod08g2268 1074 Pfam XRN 5'-3' exonuclease N-terminus 1 253 IPR004859 GO:0003676|GO:0004527
Dod08g2268 1074 Gene3D - 611 715 - -
Dod08g2268 1074 MobiDBLite consensus disorder prediction 453 467 - -
Dod08g2268 1074 MobiDBLite consensus disorder prediction 449 486 - -
Dod08g2268 1074 Gene3D - 1 135 - -
Dod08g2268 1074 Gene3D - 148 372 - -
Dod08g2268 1074 MobiDBLite consensus disorder prediction 834 858 - -
Dod08g2268 1074 SUPERFAMILY Retrovirus zinc finger-like domains 258 282 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g2268 Dod-Chr8 50640115 50657529 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g2268 08 50640115 50657529 Dod08g2268 08 50640115 50657529 ECH