Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g2262 ATGGCTTCCTTAGAAGAAAAGGTTAAAACTTGTGGTGTTGGTGTTGTTGGGGGTCAAACTCTAGTTGCTGAGATGAAACTGCTGAAAGAAATGCAGGAACAATCTGGCGTCAAGAAGACTTTGAATTCGGAGTTGTGGCATGCTTGTGCAGGCCCCCTTGTGTCTTTGCCTCAGGTGGGGAGTCTTGTGTATTACTTTCCTCAGGGACATAGTGAGCAGGTGGCTGCTTCTACTAGAAGAACAGCAACATCCCAGATTCCAAACTATCCTAATCTTCCATCACAGTTGCTGTGCCAAGTTCAAAATGTCCAACTTCATGCAGACAAAGATACAGATGAAATCTATGCTCAGATGAGTCTCCAGCCTTTGAATTCTGAAACAGATGTCTTTCCTATATCGGACTTTGGGCTAAAGCACAACAAGCATCCAACAGAGTTTTTCTGCAAAACTTTGACTGCTAGTGACACTAGCACACATGGCGGCTTTTCAGTTCCGCGAAGGGCAGCAGAGAAGCTCTTTCCTCCATTGGATTACACAATTCAACCCCCAACCCAAGAACTGGTTGTCCGTGATTTGCATGACAATACCTGGACATTTAGACATATATATCGAGGTCAGCCAAAGAGGCACCTTCTCACAACAGGTTGGAGTTTATTTGTAGGCTCAAAGAGGCTTAGAGCGGGTGATTCTGTCCTTTTTATCAGGGATGAGAAATCGCAATTGCGAGTTGGTGTCAGGCGTGTTAATCGTCAACAGACAACATTGCCATCATCAGTACTTTCTGCTGATAGCATGCACATAGGTGTCCTTGCTGCTGCAGCTCATGCTGCTGCAAATCGAATTCCATTCACTATCTTCTACAATCCAAGGGCATGCCCTTCAGAATTTGTTATTCCCCTTGCTAAATACAGAAAAGCCGCATATGGGACTCAACTCTCAGTTGGCATGAGATTTGGTATGATGTTTGAGACAGAAGAGTCGGGTAAGCGCAGGTATATGGGTACAATAGTTGGTATCAGTGAGTTGGATCCTTTGAGGTGGCCTGGTTCTAAGTGGCGAAACATTCAGGTAGAGTGGGATGAGCCAGGATGTGGTGATAAGCAGAATAGAGTTAGTGTGTGGGAGATTGAGACTCCTGAAAGCCTTTTTATCTTTCCTTCTTTGACATCAAGTCTGAAACGGCCATTGCAAACTGGGTTTTTAGAAAATGAGTGGGGAACTTTGTTGAGAAGACCTTTTATTAGAGTCCCTGAAAATGGCACAGTTGATCTCTCAAACCCAATGCCAAATCTGTATTCAGAACACCTGATGAAAATGCTTTTCAAACCGCAACTTGTTAACAATAATGGAGCCATTTTACCAGTCATGCAACAAGAATCTGCTGCTATGAGAACTACCTCACTAGAGGTGAAGACCACATTGGCAACAGATAACCAAAAAGTTATTCTCGATAGTGCTGAGAACATGCCACTGAAAAATCTGCATTCTCAATCTGTTCCTGATAAAGCTAATGCCTTCAACTTGCATTCCTTGGCCAAAATTGATAACCAACTTTCTTCTGGAGCAGTTATTGATAAGCCAAAATTAGAACCTGAGGTATTAACTGATCACATGCTTGAGTTACCATCTGTGGAAAACAACATTGATAAAGTGGCCTCAAATCCTGCTAATCTTCAAAGCCTTGCAAGCCAATTGGCATTCCTGAATCAGAACCTCAACCATTCTAATGCATGGCCTATGCAGCCCCAGTTAGAATCATTGATATCCCATGCTCAACTGATTGATTTGCCTCAATCTGATCACGCCACTGTAAATGGCATACTTCCTCAGCTTGACGTTGATGAGTGGATGGCGTATTCTTCTAACCAATCTTTTGCTGGACAAAACCGTTCAACTGGGGCTTTGTCGGATTTGCAAGAACATTCTGCACTTCAACCTCAAGTAGTTAATCCTCCAATACCTTCAATGAACCAAGAGGTGTGGGATCATTATGTCAAGAATTTTAAGTTTTTATCTCAAGCAGACCAGCTAACATCCATTTGTCAGCCAGGGCTGTACAGCCTCGGTGGTATATCTAGTTCAAACAATTTGAGGGACCTTTCAGCTGAGAGCAATAATCAAAGTGAAATCTGTGTCAATGTTGATGTTAGTAACAGTGTGAGTACCACCATGGTTGATCCCACAACTTCAAGCACCATTTTGGATGAGTTTTGCACGTTGAAGGACAGGGATTTTCAGAATCCACAAGATTGCATGGTTGGCAACTTAAGCTCAAGCCAGGATGTCCAGTCTCAGATAACATCCGCAAGCCTAGCCGATTCGCATGCCTTTCCTCTTCCAGACATCCCTGACAACTCAGGTGGTACATCTTCAAGCCATGTTGATTTTGATGAAAGCAGCTTTCTGCAGAATAATTCATGGCAGCAAGTAGCTGCGCCAATGCGAACCTACACCAAGGTGCAAAAGGCAGGTTCTGTAGGAAGATCAATTGATGTTACTACTTTCAAGAACTACGAGGAGCTGATCCGTGCAATTGAATGCATGTTTGGACTTGATGGCCTGCTGAATGACACTAAAGGTTCCGGGTGGAAATTGGTGTATGTAGACTATGAGAATGATGTCTTACTTGTTGGGGATGATCCTTGGGAGGAATTTGTTGGCTGTGTCCGCTGCATCAGAATTTTGTCACCTTTAGAAGTTCAGCAGATGAGTGAAGAGGGAATGAAGCTGCTCAACAGTGGAGCCTTGCAAGGGATCAATGTTTGA 2766 0.4349 MASLEEKVKTCGVGVVGGQTLVAEMKLLKEMQEQSGVKKTLNSELWHACAGPLVSLPQVGSLVYYFPQGHSEQVAASTRRTATSQIPNYPNLPSQLLCQVQNVQLHADKDTDEIYAQMSLQPLNSETDVFPISDFGLKHNKHPTEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTIQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFIRDEKSQLRVGVRRVNRQQTTLPSSVLSADSMHIGVLAAAAHAAANRIPFTIFYNPRACPSEFVIPLAKYRKAAYGTQLSVGMRFGMMFETEESGKRRYMGTIVGISELDPLRWPGSKWRNIQVEWDEPGCGDKQNRVSVWEIETPESLFIFPSLTSSLKRPLQTGFLENEWGTLLRRPFIRVPENGTVDLSNPMPNLYSEHLMKMLFKPQLVNNNGAILPVMQQESAAMRTTSLEVKTTLATDNQKVILDSAENMPLKNLHSQSVPDKANAFNLHSLAKIDNQLSSGAVIDKPKLEPEVLTDHMLELPSVENNIDKVASNPANLQSLASQLAFLNQNLNHSNAWPMQPQLESLISHAQLIDLPQSDHATVNGILPQLDVDEWMAYSSNQSFAGQNRSTGALSDLQEHSALQPQVVNPPIPSMNQEVWDHYVKNFKFLSQADQLTSICQPGLYSLGGISSSNNLRDLSAESNNQSEICVNVDVSNSVSTTMVDPTTSSTILDEFCTLKDRDFQNPQDCMVGNLSSSQDVQSQITSASLADSHAFPLPDIPDNSGGTSSSHVDFDESSFLQNNSWQQVAAPMRTYTKVQKAGSVGRSIDVTTFKNYEELIRAIECMFGLDGLLNDTKGSGWKLVYVDYENDVLLVGDDPWEEFVGCVRCIRILSPLEVQQMSEEGMKLLNSGALQGINV* 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g2262 921 SUPERFAMILY DNA-binding pseudobarrel domain 136 276 IPR015300 -
Dod08g2262 921 Pfam B3 DNA binding domain 147 248 IPR003340 GO:0003677
Dod08g2262 921 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 28 919 IPR044835 GO:0003677|GO:0006355|GO:0009725
Dod08g2262 921 SMART B3_2 147 249 IPR003340 GO:0003677
Dod08g2262 921 Pfam AUX/IAA family 810 898 IPR033389 -
Dod08g2262 921 ProSiteProfiles PB1 domain profile. 815 899 IPR000270 GO:0005515
Dod08g2262 921 PANTHER AUXIN RESPONSE FACTOR 5 28 919 - -
Dod08g2262 921 SUPERFAMILY CAD & PB1 domains 816 894 - -
Dod08g2262 921 Gene3D - 144 248 IPR015300 -
Dod08g2262 921 Gene3D - 311 383 - -
Dod08g2262 921 Pfam Auxin response factor 273 356 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Dod08g2262 921 ProSiteProfiles B3 DNA-binding domain profile. 147 249 IPR003340 GO:0003677
Dod08g2262 921 CDD B3_DNA 146 247 IPR003340 GO:0003677
Dod08g2262 921 Gene3D - 811 904 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g2262 Dod-Chr8 50494918 50499996 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Dod08g2262 AUX_IAA 4.8e-10 CL0072